R/get_predictions_ols.R

In javifar/ggeffects: Create Tidy Data Frames of Marginal Effects for 'ggplot' from Model Outputs

get_predictions_ols <- function(model, fitfram, ci.lvl, ...) {
  # does user want standard errors?
  se <- !is.null(ci.lvl) && !is.na(ci.lvl)

  # compute ci, two-ways
  if (!is.null(ci.lvl) && !is.na(ci.lvl))
    ci <- (1 + ci.lvl) / 2
  else
    ci <- .975

  prdat <-
    stats::predict(
      model,
      newdata = fitfram,
      type = "lp",
      se.fit = se,
      ...
    )

  if (se) {
    # copy predictions
    fitfram$predicted <- prdat$linear.predictors

    # calculate CI
    fitfram$conf.low <- prdat$linear.predictors - stats::qnorm(ci) * prdat$se.fit
    fitfram$conf.high <- prdat$linear.predictors + stats::qnorm(ci) * prdat$se.fit

    # copy standard errors
    attr(fitfram, "std.error") <- prdat$se.fit

  } else {
    # copy predictions
    fitfram$predicted <- as.vector(prdat$linear.predictors)

    # no CI
    fitfram$conf.low <- NA
    fitfram$conf.high <- NA
  }

  fitfram
}