Files in jbferet/biodivMapR

biodivMapR: an R package for a- and ß-diversity mapping using remotely-sensed images

NEWS.md R/IQR_SpatRaster.R R/IQR_outliers.R R/RowToLinear.R R/WeightedCoordsNN.R R/alphabeta_window.R R/alphabeta_window_list.R R/apply_continuum_removal.R R/apply_kmeans.R R/biodivMapR-package.R R/biodivMapR_OptClusters.R R/biodivMapR_SFS.R R/biodivMapR_chunk.R R/biodivMapR_full.R R/biodivMapR_full_tiles.R R/center_reduce.R R/check_data.R R/clean_NAsInf.R R/compute_BCdiss.R R/compute_NN_from_ordination.R R/compute_mask_IQR.R R/compute_mask_IQR_tiles.R R/continuumRemoval.R R/define_pixels_per_iter.R R/exclude_spectral_domains.R R/explore_kmeans.R R/extract_svc_from_rast.R R/extract_vect_from_rast.R R/filter_prior_CR.R R/functional_window.R R/functional_window_list.R R/get_BCdiss.R R/get_BCdiss_from_SSD.R R/get_HDR_name.R R/get_Hill.R R/get_SSD_full.R R/get_Shannon.R R/get_Simpson.R R/get_alpha_from_SSD.R R/get_asset_path.R R/get_date.R R/get_diversity_from_plots.R R/get_functional_diversity.R R/get_image_bands.R R/get_kmeans.R R/get_plots_from_tiles.R R/get_raster_diversity.R R/get_raster_diversity_mw.R R/get_raster_diversity_tile.R R/get_raster_extent.R R/get_samples_from_tiles.R R/get_spectralSpecies.R R/get_stats_from_tiles.R R/get_sunlitwindows.R R/get_valid_pixels.R R/get_valid_pixels_from_tiles.R R/get_xy_samples.R R/init_PCoA.R R/init_PCoA_samples.R R/init_kmeans.R R/init_kmeans_samples.R R/kmeans_iter.R R/kmeans_progressr.R R/maxRows_chunk.R R/mnf.R R/mosaic_tiles.R R/nbRows_chunk.R R/noise.R R/pca.R R/pco.R R/perform_PCA.R R/print_error_message.R R/produce_win_ID.R R/radiometric_filtering.R R/radiometricfilter_chunk.R R/randperm.R R/read_ENVI_header.R R/repmat.R R/rm_invariant_bands.R R/run_biodivMapR.R R/run_biodivMapR_plot.R R/sample_exact_raster.R R/sample_from_plots.R R/sample_from_plots_alpha.R R/sample_from_plots_beta.R R/sample_from_raster.R R/sample_from_raster_coords.R R/sample_plots_from_raster.R R/sample_raster.R R/save_diversity_maps.R R/save_diversity_maps_mw.R R/save_diversity_maps_tile.R R/scatter_alphabeta.R R/select_PCA_components.R R/spectralspecies_per_polygon.R R/split_chunk.R R/split_line.R R/terra_extract.R R/update_mask_from_tiles.R R/wrapperBig_PCA.R README.md TODO.md examples/example_script.R man/IQR_SpatRaster.Rd man/IQR_outliers.Rd man/RowToLinear.Rd man/WeightedCoordsNN.Rd man/alphabeta_window.Rd man/alphabeta_window_list.Rd man/apply_continuum_removal.Rd man/apply_kmeans.Rd man/biodivMapR-package.Rd man/biodivMapR_OptClusters.Rd man/biodivMapR_SFS.Rd man/biodivMapR_chunk.Rd man/biodivMapR_full.Rd man/biodivMapR_full_tiles.Rd man/center_reduce.Rd man/check_data.Rd man/clean_NAsInf.Rd man/compute_BCdiss.Rd man/compute_NN_from_ordination.Rd man/compute_mask_IQR.Rd man/compute_mask_IQR_tiles.Rd man/continuumRemoval.Rd man/define_pixels_per_iter.Rd man/exclude_spectral_domains.Rd man/explore_kmeans.Rd man/extract_svc_from_rast.Rd man/extract_vect_from_rast.Rd man/filter_prior_CR.Rd man/functional_window.Rd man/functional_window_list.Rd man/get_BCdiss.Rd man/get_BCdiss_from_SSD.Rd man/get_HDR_name.Rd man/get_Hill.Rd man/get_SSD_full.Rd man/get_Shannon.Rd man/get_Simpson.Rd man/get_alpha_from_SSD.Rd man/get_asset_path.Rd man/get_date.Rd man/get_diversity_from_plots.Rd man/get_functional_diversity.Rd man/get_image_bands.Rd man/get_kmeans.Rd man/get_plots_from_tiles.Rd man/get_raster_diversity.Rd man/get_raster_diversity_mw.Rd man/get_raster_diversity_tile.Rd man/get_raster_extent.Rd man/get_samples_from_tiles.Rd man/get_spectralSpecies.Rd man/get_stats_from_tiles.Rd man/get_sunlitwindows.Rd man/get_valid_pixels.Rd man/get_valid_pixels_from_tiles.Rd man/get_xy_samples.Rd man/init_PCoA.Rd man/init_PCoA_samples.Rd man/init_kmeans.Rd man/init_kmeans_samples.Rd man/kmeans_iter.Rd man/kmeans_progressr.Rd man/maxRows_chunk.Rd man/mnf.Rd man/mosaic_tiles.Rd man/nbRows_chunk.Rd man/noise.Rd man/pca.Rd man/pco.Rd man/perform_PCA.Rd man/print_error_message.Rd man/produce_win_ID.Rd man/radiometric_filtering.Rd man/radiometricfilter_chunk.Rd man/randperm.Rd man/read_ENVI_header.Rd man/repmat.Rd man/rm_invariant_bands.Rd man/run_biodivMapR.Rd man/run_biodivMapR_plot.Rd man/sample_exact_raster.Rd man/sample_from_plots.Rd man/sample_from_plots_alpha.Rd man/sample_from_plots_beta.Rd man/sample_from_raster.Rd man/sample_from_raster_coords.Rd man/sample_plots_from_raster.Rd man/sample_raster.Rd man/save_diversity_maps.Rd man/save_diversity_maps_mw.Rd man/save_diversity_maps_tile.Rd man/scatter_alphabeta.Rd man/select_PCA_components.Rd man/spectralspecies_per_polygon.Rd man/split_chunk.Rd man/split_line.Rd man/update_mask_from_tiles.Rd man/wrapperBig_PCA.Rd tests/testthat.R tests/testthat/test-package.R tic.R vignettes/biodivMapR.Rmd vignettes/biodivMapR_01.Rmd vignettes/biodivMapR_02.Rmd vignettes/biodivMapR_03.Rmd vignettes/biodivMapR_04.Rmd