biodivMapR_full_tiles: computes diversity metrics from raster

In jbferet/biodivMapR: biodivMapR: an R package for a- and ß-diversity mapping using remotely-sensed images

computes diversity metrics from raster

Description

computes diversity metrics from raster

Usage

biodivMapR_full_tiles(
  dsn_grid,
  feature_dir,
  list_features,
  mask_dir = NULL,
  output_dir,
  window_size,
  plots,
  nbsamples_alpha = 1e+05,
  nbsamples_beta = 2000,
  nbCPU = 1,
  pcelim = 0.02,
  maxRows = 1200,
  MovingWindow = F,
  siteName = NULL
)

Arguments

dsn_grid	character. path for the tiling grid
feature_dir	character. path where to get features
list_features	character. list of features
mask_dir	character. path for masks
output_dir	character. path where to save results
window_size	numeric. number of clusters used in kmeans
plots	list. list of sf plots
nbsamples_alpha	numeric. number of samples to compute beta diversity from
nbsamples_beta	numeric. number of samples to compute beta diversity from
nbCPU	numeric. Number of CPUs available
pcelim	numeric. minimum proportion of pixels to consider spectral species
maxRows	numeric. maximum number of rows
MovingWindow	boolean. should moving window be used?
siteName	character. name for the output files

Value

mosaic_path

jbferet/biodivMapR documentation built on April 12, 2025, 1:32 p.m.