biodivMapR_OptClusters: apply biodivMapR on a test set for different numbers of...

In jbferet/biodivMapR: biodivMapR: an R package for a- and ß-diversity mapping using remotely-sensed images

apply biodivMapR on a test set for different numbers of clusters

Description

apply biodivMapR on a test set for different numbers of clusters

Usage

biodivMapR_OptClusters(
  input_raster,
  obs_vect,
  obs2optimize,
  SelectBands,
  obs_criterion = "shannon",
  input_mask = NULL,
  outputdir = "./",
  nbclusters = 50,
  MinSun = 0.25,
  nbIter = 20,
  pcelim = 0.02,
  verbose = T,
  nbRep = 50,
  maxPixel_kmeans = 1e+05,
  Hill_order = 1,
  algorithm = "Hartigan-Wong",
  nbCPU = 1
)

Arguments

input_raster	SpatRaster or list of SpatRaster
obs_vect	SpatVector or SpatVectorCollection
obs2optimize	numeric .list of ground obs diversity metrics corresponding to obs_vect. Expected values: richness, shannon, simpson, BC
SelectBands	numeric. bnds to select from input_raster
obs_criterion	character. richness, shannon, simpson or BC
input_mask	SpatRaster corresponding to mask
outputdir	character. output directory
nbclusters	numeric.
MinSun	numeric.
nbIter	numeric.
pcelim	numeric.
verbose	boolean.
nbRep	numeric.
maxPixel_kmeans	numeric.
Hill_order	numeric.
algorithm	character.
nbCPU	numeric.

Value

list including performances (correlation) of SFS with additional features and assessed diversity metrics corresponding to each step

jbferet/biodivMapR documentation built on April 12, 2025, 1:32 p.m.