dimreductJF: Plot a dimension reduction figure for JoesFlow

In jcooperdevlin/JoesFlow: Joes Flow simplified analysis for single cell modality data

Plot a dimension reduction figure for JoesFlow

Description

Plot a dimension reduction figure for JoesFlow

Usage

dimreductJF(x, sample_data, features, ...)

## S3 method for class 'prcomp'
dimreductJF(x, sample_data, features, ...)

## S3 method for class 'matrix'
dimreductJF(x, sample_data, features, ...)

Arguments

x	Object containing clustered data (expects output from 'prcomp', 'uamp', or 'Rtsne')
sample_data	sample data
features	named vector, features in names(sample_data), names(features) = unique(kmeans_groups) – names should be ordered
...	Other objects passed along to functions within clusterJF

Value

A ggplot object

jcooperdevlin/JoesFlow documentation built on April 7, 2023, 12:42 p.m.