extract_sb_values: extract_sb_values Extract values from sample based PCA

In jcooperdevlin/JoesFlow: Joes Flow simplified analysis for single cell modality data

extract_sb_values Extract values from sample based PCA

Description

extract_sb_values Extract values from sample based PCA

Usage

extract_sb_values(clustered_data, ids, meta, grp, cluster = NULL)

Arguments

clustered_data	Object containing clustered data (expects output from 'prcomp')
ids	Character vector of ids for each row in 'clustered_data$x', corresponding to labels in 'grps'
meta	Data frame containing translation from id to group
grp	Character value identifying the column of 'meta' to use for group identifier
cluster	Data frame containing sample ID and the assigned kmeans cluster, as returned by 'kmeaner()'

Value

a data frame with values for SampleID, Group, PC1, and PC2

jcooperdevlin/JoesFlow documentation built on April 7, 2023, 12:42 p.m.