Files in jdknguyen/SMART
SMART (Semi-manual alignment to reference template): a pipeline for whole brain mapping projects
DESCRIPTION
NAMESPACE
R/SMART.R
R/annotated_smart.R
R/brainmorph.R
R/cell_count_compilation.R
R/cell_counter.R
R/choice.R
R/clean_duplicates.R
R/concatenate.R
R/filter_loop.R
R/forward_warp.R
R/functions.R
R/get_groups.R
R/get_region_area.R
R/get_region_updated.R
R/get_rois.R
R/get_savepaths.R
R/get_sunburst.R
R/get_table.R
R/get_tree.R
R/glassbrain2.R
R/im_sort.R
R/interpolate.R
R/isolate_dataset.R
R/pre-registration script.R
R/pull_atlas.R
R/regi_loop.R
R/registration2.R
R/seg_loop.R
R/setup_pl.R
R/voxel_stats.R
R/voxelize.R
R/zzz.R
README.md
SMART.Rproj
data/atlasIndex.RData
docs/SMART Guide.docx
docs/caveats.md
docs/development_info.md
docs/example_data.md
docs/index.md
docs/installation.md
docs/schematics/Reference_atlas_schem.PNG
docs/schematics/after_registration.PNG
docs/schematics/before_registration.PNG
docs/schematics/brainmorph.PNG
docs/schematics/cell_counts.PNG
docs/schematics/choice_game_1.PNG
docs/schematics/choice_game_2.PNG
docs/schematics/dataset.RData
docs/schematics/forwardwarp.PNG
docs/schematics/glassbrain.html
docs/schematics/groups.PNG
docs/schematics/heatmap.PNG
docs/schematics/midpoint_console.PNG
docs/schematics/midpoint_display.PNG
docs/schematics/midpoint_schem.PNG
docs/schematics/pipeline_schematic.PNG
docs/schematics/region_plot.PNG
docs/schematics/registration_console.PNG
docs/schematics/schematic.PNG
docs/schematics/sunburst.PNG
docs/schematics/table.PNG
docs/schematics/voxel_stats.PNG
docs/site_libs/bootstrap-3.3.5/css/bootstrap-theme.css
docs/site_libs/bootstrap-3.3.5/css/bootstrap-theme.css.map
docs/site_libs/bootstrap-3.3.5/css/bootstrap-theme.min.css
docs/site_libs/bootstrap-3.3.5/css/bootstrap.css
docs/site_libs/bootstrap-3.3.5/css/bootstrap.css.map
docs/site_libs/bootstrap-3.3.5/css/bootstrap.min.css
docs/site_libs/bootstrap-3.3.5/css/cerulean.min.css
docs/site_libs/bootstrap-3.3.5/css/cosmo.min.css
docs/site_libs/bootstrap-3.3.5/css/darkly.min.css
docs/site_libs/bootstrap-3.3.5/css/flatly.min.css
docs/site_libs/bootstrap-3.3.5/css/fonts/Lato.ttf
docs/site_libs/bootstrap-3.3.5/css/fonts/LatoBold.ttf
docs/site_libs/bootstrap-3.3.5/css/fonts/LatoItalic.ttf
docs/site_libs/bootstrap-3.3.5/css/fonts/NewsCycle.ttf
docs/site_libs/bootstrap-3.3.5/css/fonts/NewsCycleBold.ttf
docs/site_libs/bootstrap-3.3.5/css/fonts/OpenSans.ttf
docs/site_libs/bootstrap-3.3.5/css/fonts/OpenSansBold.ttf
docs/site_libs/bootstrap-3.3.5/css/fonts/OpenSansBoldItalic.ttf
docs/site_libs/bootstrap-3.3.5/css/fonts/OpenSansItalic.ttf
docs/site_libs/bootstrap-3.3.5/css/fonts/OpenSansLight.ttf
docs/site_libs/bootstrap-3.3.5/css/fonts/OpenSansLightItalic.ttf
docs/site_libs/bootstrap-3.3.5/css/fonts/Raleway.ttf
docs/site_libs/bootstrap-3.3.5/css/fonts/RalewayBold.ttf
docs/site_libs/bootstrap-3.3.5/css/fonts/Roboto.ttf
docs/site_libs/bootstrap-3.3.5/css/fonts/RobotoBold.ttf
docs/site_libs/bootstrap-3.3.5/css/fonts/RobotoLight.ttf
docs/site_libs/bootstrap-3.3.5/css/fonts/RobotoMedium.ttf
docs/site_libs/bootstrap-3.3.5/css/fonts/SourceSansPro.ttf
docs/site_libs/bootstrap-3.3.5/css/fonts/SourceSansProBold.ttf
docs/site_libs/bootstrap-3.3.5/css/fonts/SourceSansProItalic.ttf
docs/site_libs/bootstrap-3.3.5/css/fonts/SourceSansProLight.ttf
docs/site_libs/bootstrap-3.3.5/css/fonts/Ubuntu.ttf
docs/site_libs/bootstrap-3.3.5/css/journal.min.css
docs/site_libs/bootstrap-3.3.5/css/lumen.min.css
docs/site_libs/bootstrap-3.3.5/css/paper.min.css
docs/site_libs/bootstrap-3.3.5/css/readable.min.css
docs/site_libs/bootstrap-3.3.5/css/sandstone.min.css
docs/site_libs/bootstrap-3.3.5/css/simplex.min.css
docs/site_libs/bootstrap-3.3.5/css/spacelab.min.css
docs/site_libs/bootstrap-3.3.5/css/united.min.css
docs/site_libs/bootstrap-3.3.5/css/yeti.min.css
docs/site_libs/bootstrap-3.3.5/fonts/glyphicons-halflings-regular.eot
docs/site_libs/bootstrap-3.3.5/fonts/glyphicons-halflings-regular.svg
docs/site_libs/bootstrap-3.3.5/fonts/glyphicons-halflings-regular.ttf
docs/site_libs/bootstrap-3.3.5/fonts/glyphicons-halflings-regular.woff
docs/site_libs/bootstrap-3.3.5/fonts/glyphicons-halflings-regular.woff2
docs/site_libs/bootstrap-3.3.5/js/bootstrap.js
docs/site_libs/bootstrap-3.3.5/js/bootstrap.min.js
docs/site_libs/bootstrap-3.3.5/js/npm.js
docs/site_libs/bootstrap-3.3.5/shim/html5shiv.min.js
docs/site_libs/bootstrap-3.3.5/shim/respond.min.js
docs/site_libs/d3-4.13.0/d3.min.js
docs/site_libs/highlightjs-9.12.0/default.css
docs/site_libs/highlightjs-9.12.0/highlight.js
docs/site_libs/highlightjs-9.12.0/textmate.css
docs/site_libs/htmlwidgets-1.3/htmlwidgets.js
docs/site_libs/jquery-1.11.3/jquery.min.js
docs/site_libs/navigation-1.1/codefolding.js
docs/site_libs/navigation-1.1/sourceembed.js
docs/site_libs/navigation-1.1/tabsets.js
docs/site_libs/sequences-0.1/README.md
docs/site_libs/sequences-0.1/sequences.css
docs/site_libs/sunburst-binding-2.1.0/sunburst.js
docs/tutorial.md
docs/updates.md
docs/wholebrain_installation.md
images/cmake.png
images/cmake2.png
images/cv1.png
images/fftw.png
images/fftw2.png
images/fftw3.png
images/r35.png
images/r352.png
images/rs1.png
images/rtools1.png
images/rtools2.png
images/rtools3.png
images/rtools4.png
images/rtools5.png
images/rtools6.png
man/SMART.Rd
man/brainmorph.Rd
man/cell_count_compilation.Rd
man/cell_counter.Rd
man/choice.Rd
man/clean_duplicates.Rd
man/concatenate.Rd
man/dot-onAttach.Rd
man/filter_loop.Rd
man/forward_warp.Rd
man/get_groups.Rd
man/get_rois.Rd
man/get_savepaths.Rd
man/get_sunburst.Rd
man/get_table.Rd
man/get_tree.Rd
man/glassbrain2.Rd
man/im_sort.Rd
man/interpolate.Rd
man/isolate_dataset.Rd
man/platereturn.Rd
man/pull_atlas.Rd
man/regi_loop.Rd
man/registration2.Rd
man/seg_loop.Rd
man/setup_pl.Rd
man/voxel_stats.Rd
man/voxelize.Rd
