Files in jdreyf/ezlimmaplot
Bioinformatics plots using limma and ggplot2, some from output of ezlimma
.Rbuildignore
.github/.gitignore
.github/workflows/R-CMD-check.yaml
.gitignore
CODE_OF_CONDUCT.md
DESCRIPTION
LICENSE
NAMESPACE
R/barplot_pwys.R
R/bubbleplot_pwys.R
R/dotplot_pwys.R
R/edgeList2graph.R
R/extract_prefix.R
R/ezheat.R
R/ezpca.R
R/eztsne.R
R/ezvenn.R
R/ezvolcano.R
R/multi_cor_heat.R
R/multi_covar_pca.R
R/multi_heat.R
R/multi_venn.R
R/multi_volcano.R
R/neighbor_nms.R
R/order_stats_by_alternative.R
R/pivot_roast_longer.R
R/plot_by_grp.R
R/plot_man.R
R/plot_missing.R
R/plot_pwy.R
R/prune_mat.R
R/sif2edgelist.R
R/signif_hist.R
R/sub_labels.R
README.md
codecov.yml
ezlimmaplot.Rproj
man/barplot_pwys.Rd
man/bubbleplot_pwys.Rd
man/dotplot_pwys.Rd
man/edgelist2graph.Rd
man/extract_prefix.Rd
man/ezheat.Rd
man/ezpca.Rd
man/eztsne.Rd
man/ezvenn.Rd
man/ezvolcano.Rd
man/multi_cor_heat.Rd
man/multi_covar_pca.Rd
man/multi_heat.Rd
man/multi_venn.Rd
man/multi_volcano.Rd
man/neighbor_nms.Rd
man/order_stats_by_alternative.Rd
man/pivot_roast_longer.Rd
man/plot_by_grp.Rd
man/plot_man.Rd
man/plot_missing.Rd
man/plot_pwy.Rd
man/prune_mat.Rd
man/sif2edgelist.Rd
man/signif_hist.Rd
man/sub_labels.Rd
tests/testthat.R
tests/testthat/_snaps/ezheat/heat.svg
tests/testthat/_snaps/ezheat/heat2.svg
tests/testthat/_snaps/ezheat/heat3.svg
tests/testthat/_snaps/ezheat/heat4.svg
tests/testthat/_snaps/ezheat/heat5.svg
tests/testthat/_snaps/ezheat/heat6.svg
tests/testthat/_snaps/ezpca/pca-df.svg
tests/testthat/_snaps/ezpca/pca-labels.svg
tests/testthat/_snaps/ezpca/pca-size.svg
tests/testthat/_snaps/ezpca/pca-stit.svg
tests/testthat/_snaps/ezpca/pca-stit2.svg
tests/testthat/_snaps/ezpca/pca-stit3.svg
tests/testthat/_snaps/ezpca/pca-tit.svg
tests/testthat/_snaps/ezpca/pca-tit2.svg
tests/testthat/_snaps/ezpca/pca-tit3.svg
tests/testthat/_snaps/ezpca/pca.svg
tests/testthat/_snaps/ezpca/pca2.svg
tests/testthat/_snaps/ezpca/pca3.svg
tests/testthat/_snaps/eztsne/tsne-labels.svg
tests/testthat/_snaps/eztsne/tsne-size.svg
tests/testthat/_snaps/eztsne/tsne-stit.svg
tests/testthat/_snaps/eztsne/tsne-stit2.svg
tests/testthat/_snaps/eztsne/tsne-stit3.svg
tests/testthat/_snaps/eztsne/tsne-tit.svg
tests/testthat/_snaps/eztsne/tsne-tit2.svg
tests/testthat/_snaps/eztsne/tsne-tit3.svg
tests/testthat/_snaps/eztsne/tsne.svg
tests/testthat/_snaps/eztsne/tsne2.svg
tests/testthat/_snaps/eztsne/tsne3.svg
tests/testthat/_snaps/ezvenn/venn-nolfc.svg
tests/testthat/_snaps/ezvenn/venn-nolfc2.svg
tests/testthat/_snaps/ezvenn/venn.svg
tests/testthat/_snaps/ezvenn/venn2.svg
tests/testthat/_snaps/ezvolcano/ann-ab.svg
tests/testthat/_snaps/ezvolcano/empty-dots.svg
tests/testthat/_snaps/ezvolcano/ggrepel.svg
tests/testthat/_snaps/ezvolcano/no-error.svg
tests/testthat/_snaps/ezvolcano/no-labels.svg
tests/testthat/_snaps/ezvolcano/topright-red.svg
tests/testthat/_snaps/ezvolcano/vol7.svg
tests/testthat/_snaps/multi_venn/mvenn-nolfc.svg
tests/testthat/_snaps/multi_venn/mvenn-nolfc2.svg
tests/testthat/_snaps/multi_venn/mvenn.svg
tests/testthat/_snaps/multi_venn/mvenn2.svg
tests/testthat/_snaps/multi_volcano/mvol1.svg
tests/testthat/_snaps/multi_volcano/mvol2.svg
tests/testthat/_snaps/multi_volcano/mvol3.svg
tests/testthat/_snaps/multi_volcano/mvol4.svg
tests/testthat/_snaps/plot_by_grp/pbg-gene1-nbins100.svg
tests/testthat/_snaps/plot_by_grp/pbg-gene1.svg
tests/testthat/_snaps/plot_by_grp/pbg-gene2-df.svg
tests/testthat/_snaps/plot_by_grp/pbg-gene2.svg
tests/testthat/_snaps/plot_by_grp/pbg-gene3.svg
tests/testthat/_snaps/plot_man/g1.svg
tests/testthat/_snaps/signif_hist/sh.svg
tests/testthat/helper-ezlimmaplot.R
tests/testthat/teardown-ezlimmaplot.R
tests/testthat/test-barplot_pwys.R
tests/testthat/test-bubbleplot_pwys.R
tests/testthat/test-dotplot_pwys.R
tests/testthat/test-extract_prefix.R
tests/testthat/test-ezheat.R
tests/testthat/test-ezpca.R
tests/testthat/test-eztsne.R
tests/testthat/test-ezvenn.R
tests/testthat/test-ezvolcano.R
tests/testthat/test-multi_cor_heat.R
tests/testthat/test-multi_covar_pca.R
tests/testthat/test-multi_heat.R
tests/testthat/test-multi_venn.R
tests/testthat/test-multi_volcano.R
tests/testthat/test-neighbor_nms.R
tests/testthat/test-pivot_roast_longer.R
tests/testthat/test-plot_by_grp.R
tests/testthat/test-plot_man.R
tests/testthat/test-plot_pwy.R
tests/testthat/test-prune_mat.R
tests/testthat/test-sif2edgelist.R
tests/testthat/test-signif_hist.R
tests/testthat/test-sub_labels.R
vignettes/ezlimmaplot-vignette.Rmd
