sif2edgelist: Clean Pathway Commons SIF file
In jdreyf/ezlimmaplot: Bioinformatics plots using limma and ggplot2, some from output of ezlimma
sif2edgelist R Documentation
Clean Pathway Commons SIF file
Description
Remove some ubiquitious IDs from Pathway Commons SIF file, and transform to edge-list.
Usage
sif2edgelist(sif, rm.ids = "CHEBI:15377")
Arguments
sif
SIF file from Pathway Commons
rm.ids
vector of analyte IDs to remove. Default CHEBI:15377 corresponds to water.
Value
Edge-list matrix with two columns.
jdreyf/ezlimmaplot documentation built on Feb. 8, 2025, 2:25 a.m.
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| sif2edgelist | R Documentation |
Clean Pathway Commons SIF file
Description
Remove some ubiquitious IDs from Pathway Commons SIF file, and transform to edge-list.
Usage
sif2edgelist(sif, rm.ids = "CHEBI:15377")
Arguments
sif |
SIF file from Pathway Commons |
rm.ids |
vector of analyte IDs to remove. Default |
Value
Edge-list matrix with two columns.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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