plot_missing: Plot missingness probability against average log abundance

In jdreyf/ezlimmaplot: Bioinformatics plots using limma and ggplot2, some from output of ezlimma

Plot missingness probability against average log abundance

Description

Plot missingness probability against average log abundance.

Usage

plot_missing(object, name = NA, alpha = 0.5, link = c("logit", "probit"))

Arguments

object	Matrix-like object with features (e.g. genes) as rows and samples as columns.
name	File name of the plot.
alpha	Transparency of color for data points. The regression line uses half this transparency.
link	Binomial link to use. Possibilities are logit or probit.

Value

Invisibly, a ggplot object.

jdreyf/ezlimmaplot documentation built on Feb. 8, 2025, 2:25 a.m.