README.md

In jdreyf/ezlimmaplot: Bioinformatics plots using limma and ggplot2, some from output of ezlimma

ezlimmaplot

R package for plotting bioinformatics results, especially those from the ezlimma package.

Install

On Windows, you should have Rtools.

Install ezlimmaplot from GitHub using remotes within R. You must install remotes, e.g. with install.packages("remotes"), if you haven't before. ezlimmaplot is intended for use with ezlimma, which depends on limma, so you should install these with instructions below if you haven't before.

#if haven't already installed limma
install.packages("BiocManager") #if haven't already installed BiocManager
library(BiocManager)
BiocManager::install("limma")

library(remotes)
remotes::install_github(repo="jdreyf/ezlimma", build_opts = c("--no-resave-data", "--no-manual"), build_vignettes = TRUE)
remotes::install_github(repo="jdreyf/Hitman", build_opts = c("--no-resave-data", "--no-manual"), build_vignettes = TRUE)
remotes::install_github(repo="jdreyf/ezlimmaplot", build_opts = c("--no-resave-data", "--no-manual"), build_vignettes = TRUE)

Usage

The vignette presents a tutorial. To see the vignette:

library(limma)
library(ezlimma)
library(ezlimmaplot)
browseVignettes(package="ezlimmaplot")

and click on HTML.

Code of Conduct

This project is released with a Contributor Code of Conduct. By contributing to this project, you agree to abide by its terms.

jdreyf/ezlimmaplot documentation built on Feb. 8, 2025, 2:25 a.m.