calcDerivedParms: calcDerivedParms function
In jeanlucj/AlfSimHlpR: Functions added to AlphaSimR to simplify simulating breeding schemes
Description
Usage
Arguments
Details
Value
View source: R/SpecifyPipeline.R
Description
Once you have read in parameters from a control file, or set them yourself, there are still a few derived parameters that are needed. This function calculates them.
Usage
1
calcDerivedParms(bsp)
Arguments
bsp
A list. bsp is short for breeding sheme parameters.
Details
This function is only called internally by other functions used to specify the pipeline
Should have default if not specified
DONE stageToGenotype=stageNames[1]
DONE useOptContrib=FALSE,
DONE nCandOptCont=nEntries[1], targetEffPopSize=nParents
DONE nChks=0, entryToChkRatio=0
DONE phenoF1toStage1=FALSE, errVarPreStage1=genoVar*20
DONE quickHaplo=FALSE
DONE useCurrentPhenoTrain=FALSE
DONE nCyclesToKeepRecords=max(nStages+1, 5)
DONE nCyclesToRun=nCyclesToKeepRecords+1
DONE selCritPipeAdv=selCritPopImprov=selCritIID
Value
A list bsp that extends the input with a few derived parameters
jeanlucj/AlfSimHlpR documentation built on Nov. 7, 2021, 5:10 p.m.
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Description Usage Arguments Details Value
View source: R/SpecifyPipeline.R
Description
Once you have read in parameters from a control file, or set them yourself, there are still a few derived parameters that are needed. This function calculates them.
Usage
1 | calcDerivedParms(bsp)
|
Arguments
bsp |
A list. bsp is short for breeding sheme parameters. |
Details
This function is only called internally by other functions used to specify the pipeline
Should have default if not specified DONE stageToGenotype=stageNames[1] DONE useOptContrib=FALSE, DONE nCandOptCont=nEntries[1], targetEffPopSize=nParents DONE nChks=0, entryToChkRatio=0 DONE phenoF1toStage1=FALSE, errVarPreStage1=genoVar*20 DONE quickHaplo=FALSE DONE useCurrentPhenoTrain=FALSE DONE nCyclesToKeepRecords=max(nStages+1, 5) DONE nCyclesToRun=nCyclesToKeepRecords+1 DONE selCritPipeAdv=selCritPopImprov=selCritIID
Value
A list bsp that extends the input with a few derived parameters
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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