cmtk.targetvolume: Defines a target volume for a CMTK reformatx operation

In jefferis/nat: NeuroAnatomy Toolbox for Analysis of 3D Image Data

Defines a target volume for a CMTK reformatx operation

Description

cmtk.targetvolume.list is designed to cope with any user-defined class for which an as.im3d method exists. Presently the only example in the nat.* ecosystem is nat.templatebrains::as.im3d.templatebrain.

Usage

cmtk.targetvolume(target, ...)

## S3 method for class 'im3d'
cmtk.targetvolume(target, ...)

## S3 method for class 'list'
cmtk.targetvolume(target, ...)

## Default S3 method:
cmtk.targetvolume(target, ...)

Arguments

target	A character vector specifying an image file on disk, an im3d object (or an object that can be coerced to im3d) or a 6-or 9-vector defining a grid in the form Nx,Ny,Nz,dX,dY,dZ,[Ox,Oy,Oz].
...	additional arguments passed to methods

Details

if the character vector specifies an AmiraMesh file, it will be converted to a bare im3d object and then to an appropriate '–target-grid' specification.

Value

a character vector specifying the full cmtk reformatx '–target' or '–target-grid' argument

Examples

## Not run: 
# see https://github.com/natverse/nat.flybrains
library(nat.flybrains)
cmtk.targetvolume(FCWB)

## End(Not run)

jefferis/nat documentation built on Feb. 22, 2024, 12:45 p.m.