Files in jefferis/nat
NeuroAnatomy Toolbox for Analysis of 3D Image Data

.Rbuildignore

.github/.gitignore

.github/workflows/R-CMD-check.yaml

.gitignore

DESCRIPTION

NAMESPACE

NEWS.md R/alphashape3d.R R/amiralandmarks-io.R R/amiramesh-io.R R/brotli.R R/cmtk-reformat.R R/cmtk.R R/cmtk_geometry.R R/cmtk_io.R R/cmtkreg.R R/coordinates.R R/dist3D_Segment_to_Segment.R R/dotprops.R R/geometry.R R/graph-nodes.R R/hxsurf.R R/im3d.R R/interactive.R R/morphometry.R R/nat-data.R R/nat-package.R R/ndigest.R R/neuron-io-amira.R R/neuron-io-fiji.R R/neuron-io-neuroml.R R/neuron-io.R R/neuron-mesh.R R/neuron-plot.R R/neuron.R R/neuronlist.R R/neuronlist_interactive_3d.R R/neuronlist_sets.R R/neuronlistfh.R R/neuronlistz.R R/ngraph.R R/nrrd-io.R R/pop3d.R R/potential_synapses.R R/qs.R R/reglist.R R/seglist.R R/summary.R R/utils.R R/vaa3draw-io.R R/vtk-io.R R/wire3d.R R/xform.R R/xformimage.R R/xformpoints.R R/xyzmatrix.R R/zzz.R README.md

_pkgdown.yml

build-cmtk.sh

build_docs.r

codecov.yml

cran-comments.md

data/Cell07PNs.rda

data/MBL.surf.rda

data/dl1neuron.rda

data/kcs20.rda

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inst/CITATION

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revdep/.gitignore

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tests/testthat/testdata/amira/JFRC2_neuropils_almblh_ascii.surf

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tests/testthat/testdata/amira/tetrahedron_notriangles.surf

tests/testthat/testdata/cmtk/.gitattributes

tests/testthat/testdata/cmtk/FCWB_JFRC2_01_warp_level-01.list/registration.gz

tests/testthat/testdata/cmtk/FCWB_JFRC2_01_warp_level-01.list/settings

tests/testthat/testdata/cmtk/FCWB_JFRC2_01_warp_level-01.list/statistics

tests/testthat/testdata/cmtk/FCWB_JFRC2_01_warp_level-01.list/studylist

tests/testthat/testdata/cmtk/FCWB_mirror_level-01.list/registration.gz

tests/testthat/testdata/cmtk/FCWB_mirror_level-01.list/settings

tests/testthat/testdata/cmtk/FCWB_mirror_level-01.list/statistics

tests/testthat/testdata/cmtk/FCWB_mirror_level-01.list/studylist

tests/testthat/testdata/cmtk/dofv1.1wshears.list/registration

tests/testthat/testdata/cmtk/dofv1.1wshears.list/studylist

tests/testthat/testdata/cmtk/dofv2.4wshears.list/registration

tests/testthat/testdata/cmtk/dofv2.4wshears.list/studylist

tests/testthat/testdata/dotprops/masse/SAKW13-1_dots4.rda

tests/testthat/testdata/dotprops/masse/SAKW13-1_dots4_properties.rda

tests/testthat/testdata/landmarks/JFRC2.points

tests/testthat/testdata/landmarks/JFRC2_single.points

tests/testthat/testdata/neuroml/level1/CablesIncluded.swc

tests/testthat/testdata/neuroml/level1/CablesIncluded.xml

tests/testthat/testdata/neuroml/level1/L23PyrFRB.morph.xml

tests/testthat/testdata/neuroml/level1/Simple.morph.swc

tests/testthat/testdata/neuroml/level1/Simple.morph.xml

tests/testthat/testdata/neuroml/level1/SimpleNeuroML.xml

tests/testthat/testdata/neuroml2/catsmall.nml

tests/testthat/testdata/neuron/EBT7R.CNG.swc

tests/testthat/testdata/neuron/EBT7R.am

tests/testthat/testdata/neuron/EBT7R.rds

tests/testthat/testdata/neuron/EBT7R_nans.am

tests/testthat/testdata/neuron/MultiplePathsJoinedToMainPath.traces

tests/testthat/testdata/neuron/Neurites.am

tests/testthat/testdata/neuron/Neurites.rds

tests/testthat/testdata/neuron/NeuritesWithIsolatedPoints_veryshort.am

tests/testthat/testdata/neuron/SequentiallyBranchingTrace.traces

tests/testthat/testdata/neuron/SinglePath.traces

tests/testthat/testdata/neuron/XT6L2.CNG.swc

tests/testthat/testdata/neuron/fitted.traces

tests/testthat/testdata/neuron/fragmented_neuron.rds

tests/testthat/testdata/neuron/testCell07PNs1_spine.rds

tests/testthat/testdata/neuron/testneuron_am3d.am

tests/testthat/testdata/neuron/testneuron_am3d.am.gz

tests/testthat/testdata/neuron/testneuron_am3d_ascii.am.gz

tests/testthat/testdata/neuron/testneuron_fclineset.am.gz

tests/testthat/testdata/neuron/testneuron_lineset.am

tests/testthat/testdata/neuron/unfitted.swc

tests/testthat/testdata/nrrd/FCWB_2um_mask.nrrd

tests/testthat/testdata/nrrd/FruMARCM-F000002_seg001_03-acrop.nrrd

tests/testthat/testdata/nrrd/JFRC2-444_mask.nrrd

tests/testthat/testdata/nrrd/LHMask.nhdr

tests/testthat/testdata/nrrd/LHMask.nrrd

tests/testthat/testdata/nrrd/LHMask_sum.nrrd

tests/testthat/testdata/nrrd/badenc.nhdr

tests/testthat/testdata/nrrd/badtype.nhdr

tests/testthat/testdata/nrrd/datafile_list.nhdr

tests/testthat/testdata/nrrd/datafile_listslab.nhdr

tests/testthat/testdata/nrrd/dataforstats.nrrd

tests/testthat/testdata/selfun_cell07.rds

tests/testthat/testdata/summary_bl.rds

tests/testthat/testdata/summary_cell07pns.rds

tests/testthat/testdata/v3draw/L1DS1_crop_straight_crop.v3draw

tests/testthat/testdata/v3draw/L1DS1_crop_straight_crop_ch1.nhdr

tests/testthat/testdata/v3draw/L1DS1_crop_straight_crop_ch1.v3draw

tests/testthat/testdata/v3draw/L1DS1_crop_straight_crop_slice.v3draw

travisbuildchildren.sh

vignettes/Installation.Rmd vignettes/NeuroGeometry.Rmd

vignettes/fig/neuron-graph.svg

vignettes/fig/neuronlist-01.png

vignettes/fig/neuronlist-subsets-01.png

vignettes/fig/neuronlist-subsets.pdf vignettes/fig/neuronlist.pdf vignettes/neurons-as-graph.Rmd vignettes/neurons-intro.Rmd vignettes/plotly.Rmd

jefferis/nat documentation built on Feb. 22, 2024, 12:45 p.m.

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NeuroAnatomy Toolbox for Analysis of 3D Image Data

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NeuroAnatomy Toolbox for Analysis of 3D Image Data

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