threshold: Threshold an object, typically to produce a mask

In jefferis/nat: NeuroAnatomy Toolbox for Analysis of 3D Image Data

Threshold an object, typically to produce a mask

Description

Threshold an object, typically to produce a mask

Usage

threshold(x, ...)

## S3 method for class 'im3d'
threshold(
  x,
  threshold = 0,
  mode = c("logical", "integer", "raw", "numeric"),
  ...
)

Arguments

x	Object to be thresholded
...	Additional arguments passed to methods
threshold	Either a numeric value that pixels must exceed in order to be included in the mask or a logical vector defining foreground pixels.
mode	The storage mode of the resultant object (see vector

Details

Note that threshold.im3d passes ... arguments on to im3d

Value

an object with attributes matching x and elements with value as.vector(TRUE, mode=mode) i.e. TRUE, 1, 0x01 and as.vector(FALSE, mode=mode) i.e. FALSE, 0, 0x00 as appropriate.

See Also

Other im3d: as.im3d(), boundingbox(), im3d-coords, im3d-io, im3d(), imexpand.grid(), imslice(), is.im3d(), mask(), origin(), projection(), unmask(), voxdims()

Examples

x=im3d(rnorm(1000),dims=c(10,10,10), BoundingBox=c(20,200,100,200,200,300))
stopifnot(all.equal(threshold(x, 0), threshold(x, x>0)))

jefferis/nat documentation built on Feb. 22, 2024, 12:45 p.m.