make_roi_from_mean: Construct a mean image, blur and threshold to make an ROI for...

Description Usage Arguments Details Value See Also

View source: R/analysis.R

Description

Construct a mean image, blur and threshold to make an ROI for analysis

Usage

1
make_roi_from_mean(x, blur = 5, thr = "95%", ...)

Arguments

x

A hyperstack or path to one or more TIFF files (see make_hyperstack)

blur

The gaussian sigma to use

thr

A thresholding specification (passed to imager::threshold)

...

Additional arguments passed to make_hyperstack

Details

This is currently targeted at single plane imaging data.

Value

A 2D mask in the form of an imager::cimg object

See Also

cimg, t_profile, make_hyperstack


jefferis/scanimage documentation built on May 19, 2019, 3:58 a.m.