vfbr-package | R Documentation |
The Virtual Fly Brain project provides a website virtualflybrain.org containing neuroanatomical data for the fruit fly, Drosophila melanogaster, curated from published journal articles and bulk image data. This package enables queries against an experimental (as of time of writing) API.
vfb_solr_query
Allows you to query VFB's SOLR end
point. This gives you programmatic access to the great majority of searches
that you can perform interactively on the VFB website.
vfb_neo4j_query
Allows you to query VFB's Neo4J end
point. This gives you programmatic access to many sophisticated searches
based on the VFB ontology, including searches that may not be easily
accessible via the website.
vfb_synonym_query
A higher level function that allows
you to search for canonical terms with synonyms matching a given query.
The following options can be set to specify default
behaviour. They will be set to sensible defaults on package startup, unless
you have previously set a value (e.g. in your Rprofile
).
vfbr.server
URL of main VFB server
vfbr.server.neo4j
URL for Neo4J graph database queries
vfbr.server.solr
URL for SOLR queries
vfbr.server.owl
URL for OWL ontology queries
vfbr.server.gepetto
URL of VFB's gepetto server for 3D visualisation (see vfb_3dbrowser_url
.)
vfbr.server.r
URL for opencpu/R queries - not for users at the moment
vfbr.stack.gmr_url
URL containing listing of registered GMR Gal4 confocal stacks. See gmr_stack_urls
vfbr.stack.downloads
Location of downloaded stacks. See download_gmr_stacks
Maintainer: Gregory Jefferis jefferis@gmail.com (ORCID)
See http://virtualflybrain.org
vfb_solr_query
# Show state of vfbr package options
options()[grep('^vfbr', names(options()))]
## Not run:
example(vfb_solr_query)
## End(Not run)
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.