Man pages for jefferislab/jimpipeline
Package to wrap Jefferis lab image processing / registration pipeline
| bunzip2 | Uncompress a file with bunzip2 |
| convertlsmstonrrd | Split Zeiss LSMs and save each channel to a nrrd |
| jimpipeline-package | Package to wrap Jefferis lab image processing pipeline |
| lsm_metadata | Extract the metadata from Zeiss LSM file using loci... |
| make_lsm_df | Make summary dataframe for lsm files and their key metadata |
| parse_key_lsm_metadata | Parse key Zeiss LSM metadata into an R list |
| quickhash | Compute a (quick) hash for some part of the contents of a set... |
| quickhash.lsm | Compute a quick hash for head and tail of a Zeiss LSM... |
| runFijiMacro | Call external Fiji/ImageJ executable |
| skeletonise_nrrds | Skeletonise NRRD images (e.g. to make them suitable for... |
