lsm_metadata: Extract the metadata from Zeiss LSM file using loci...

In jefferislab/jimpipeline: Package to wrap Jefferis lab image processing / registration pipeline

Description

Specifically, this relies on the showinf tool of loci Details

Usage

lsm_metadata(
  f,
  cachefile = TRUE,
  ReturnMetaData = TRUE,
  Force = FALSE,
  UseLock = FALSE
)

Arguments

f	Path to lsm file
cachefile	Whether to save a copy of metadata to disk (TRUE)
ReturnMetaData	Whether to return metadata rather than success (default: TRUE)
Force	whether to re-parse metadata even if a cached version exists
UseLock	whether to use a lock file while parsing for simple parallelism

Value

character vector of metadata OR TRUE/FALSE for success

See Also

parse_key_lsm_metadata

Examples

## Not run: 
lsmdir=file.path(fcconfig$regroot,"lsms")
for(f in dir(lsmdir,patt="lsm$",full=T)) lsm_metadata(f,UseLock=TRUE)

## End(Not run)

jefferislab/jimpipeline documentation built on Sept. 14, 2020, 3:41 p.m.