Description Usage Arguments Details Value See Also
Make summary dataframe for lsm files and their key metadata
1 | make_lsm_df(lsmdir, oldlsmdf = NULL, extrafields = NULL, Verbose = TRUE)
|
lsmdir |
Path to directory containing lsm files |
oldlsmdf |
Dataframe or path to rda file containing one |
extrafields |
Function to parse extra fields from metadata for each image |
Verbose |
Logical: Show messages about progress/updating of cached data |
Will calculate md5 sums for all input files and then use this to update a dataframe.
If an extrafields function is supplied, it should take one parameter, the
list output of parse_key_lsm_metadata
, which will include as
an attribute the full contents of the metadata file dumped by the loci
showinf tool. The function should take care to return values for all fields
that it could return each time it is called even if these are NA and
to ensure that values have a consistent data type per field.
dataframe
lsm_metadata
, parse_key_lsm_metadata
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.