downloadskeletons: Download neuronal skeletons and associated meta-data

In jefferislab/lhns: Skeleton data for neurons associated with the lateral horn of Drosophila melanogaster

Description

Download neuronal morphologies as SWC files, compressed into a .zip file along with a CSV for their meta-data

Usage

downloadskeletons(
  nl,
  dir,
  format = "swc",
  subdir = NULL,
  INDICES = names(nl),
  files = NULL,
  Force = FALSE,
  ...
)

Arguments

nl	the neuronlist to download
dir	directory to which to download data
format	unique abbreviation of one of the registered file formats for neurons including 'swc', 'hxlineset', 'hxskel'
subdir	string naming field in neuron that specifies a subdirectory OR expression to evaluate in the context of neuronlist's df attribute
INDICES	character vector or expression specifying output filenames. See examples and nat::write.neuron for details
files	character vector or expression specifying output filenames. See examples and nat::write.neuron for details
Force	whether to overwrite an existing file
...	additional arguments passed to nat::write.neuron

jefferislab/lhns documentation built on Aug. 20, 2020, 10:10 p.m.