lh.em: EM neuron skeletons for published lateral horn related...

In jefferislab/lhns: Skeleton data for neurons associated with the lateral horn of Drosophila melanogaster

Description

EM skeletons complete with synapses, a neuronlist objects for LH-associated neurons including projection neurons that input the lateral horn. These neurons have been reconstructed in both the FAFB ssTEM brain space manually/semi-manually. They have also been cross-matched with their equivalent neurons from the FlyEM hemibrain project. These objects have been warped into the nat.flybrains::nat.flybrains::FCWB template brain space, as has much of the data in this package. Note that the reconstruction of olfactory PN dendrites has not been done to synaptic-completion.

Usage

lh.fafb

pn.fafb

fafb_lhns

lm_em_matches

Format

An object of class neuronlist (inherits from list) of length 238.

An object of class neuronlist (inherits from list) of length 346.

An object of class data.frame with 239 rows and 17 columns.

An object of class data.frame with 2877 rows and 8 columns.

Details

These neurons have also been split into their putative primary neurite, primary dendrite, dendrite, axon and soma compartments. See the function hemibrainr::flow_centrality for details.

Source

https://doi.org/10.1101/2020.01.19.911453

References

Bates, A. S., P. Schlegel, R. J. V. Roberts, N. Drummond, I. F. M. Tamimi, R. Turnbull, X. Zhao, et al. 2020. “Complete Connectomic Reconstruction of Olfactory Projection Neurons in the Fly Brain.” bioRxiv. doi:10.1101/2020.01.19.911453.

Marin, Elizabeth C., Ruairí J. V. Roberts, Laurin Büld, Maria Theiss, Markus W. Pleijzier, Tatevik Sarkissian, Willem J. Laursen, et al. 2020. “Connectomics Analysis Reveals First, Second, and Third Order Thermosensory and Hygrosensory Neurons in the Adult Drosophila Brain.” bioRxiv.doi:10.1101/2020.01.20.912709

Dolan, Michael-John, Shahar Frechter, Alexander Shakeel Bates, Chuntao Dan, Paavo Huoviala, Ruairí Jv Roberts, Philipp Schlegel, et al. 2019. “Neurogenetic Dissection of the Drosophila Lateral Horn Reveals Major Outputs, Diverse Behavioural Functions, and Interactions with the Mushroom Body.” eLife 8 (May). doi:10.7554/eLife.43079

Dolan, Michael-John, Ghislain Belliart-Guérin, Alexander Shakeel Bates, Shahar Frechter, Aurélie Lampin-Saint-Amaux, Yoshinori Aso, Ruairí J. V. Roberts, et al. 2018. “Communication from Learned to Innate Olfactory Processing Centers Is Required for Memory Retrieval in Drosophila.” Neuron 100 (3): 651–68.e8.doi:10.1016/j.neuron.2018.08.037

Huoviala, Paavo, Michael-John Dolan, Fiona M. Love, Shahar Frechter, Ruairí J. V. Roberts, Zane Mitrevica, Philipp Schlegel, et al. 2018. “Neural Circuit Basis of Aversive Odour Processing in Drosophila from Sensory Input to Descending Output.” bioRxiv. doi:10.1101/394403

Li, Peter H., Larry F. Lindsey, Michał Januszewski, Zhihao Zheng, Alexander Shakeel Bates, István Taisz, Mike Tyka, et al. 2019. “Automated Reconstruction of a Serial-Section EM Drosophila Brain with Flood-Filling Networks and Local Realignment.” bioRxiv. doi:10.1101/605634

jefferislab/lhns documentation built on Aug. 20, 2020, 10:10 p.m.