get_m2eqtls: Finds m2eQTLs from gene expression and DNA methylation data.
In jeffreyat/M2EFM: M2EFM
Description
Finds m2eQTLs from gene expression and DNA methylation data.
Usage
1
2
get_m2eqtls(probe_list_loc = NULL, meth_data = NULL, exp_data = NULL,
gene_list = NULL, num_cis = 1e+10, num_trans = 100, num_probes = 300)
Arguments
probe_list_loc
path to a list of probe ids, used to filter methylation data
meth_data
path to a matrix of methylation data or a MethylationData object
exp_data
path to expression data or an ExpressionData object
gene_list
a file with a list of genes to filter to (optional)
num_cis
number of cis m2eQTLs to return
num_trans
number of trans m2eQTLs to return
num_probes
number of top probes to use in analysis
jeffreyat/M2EFM documentation built on May 19, 2019, 4 a.m.
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Description
Finds m2eQTLs from gene expression and DNA methylation data.
Usage
1 2 | get_m2eqtls(probe_list_loc = NULL, meth_data = NULL, exp_data = NULL,
gene_list = NULL, num_cis = 1e+10, num_trans = 100, num_probes = 300)
|
Arguments
probe_list_loc |
path to a list of probe ids, used to filter methylation data |
meth_data |
path to a matrix of methylation data or a MethylationData object |
exp_data |
path to expression data or an ExpressionData object |
gene_list |
a file with a list of genes to filter to (optional) |
num_cis |
number of cis m2eQTLs to return |
num_trans |
number of trans m2eQTLs to return |
num_probes |
number of top probes to use in analysis |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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