Man pages for jeffreyhanson/structurer
Structure Analysis in R

ClumppOpts	Create ClumppOpts object
ClumppOpts-class	ClumppOpts: An S4 class to represent Structure parameters
delta.k.plot	Plot delta-K values
gelman.diag	Gelman-Rubin diagnostic statistics
lnprob	Probability of the model
lnprob.plot	Plot estimated Ln probability of data
loci.names	Loci names
loci.subset	Subset loci
logLik	Negative Log Likelihood
n.loci	Number of loci
n.pop	Number of populations
n.samples	Number of samples
print	Print objects
read.ClumppReplicates	Read replicate data to file for clumpp
read.StructureData	Read FSTAT data for Structure
read.StructureReplicate	Read Structure run
run.single.Structure	Run Structure anaylsis for a single MAXPOPS parameter.
run.Structure	Run Structure anaylsis
sample.membership	Sample membership
sample.names	Sample names
sample.subset	Subset samples
show	Show objects
StructureAnalysis	Create StructureAnalysis object
StructureAnalysis-class	StructureAnalysis: An S4 class to represent inputs and...
StructureCollection	Create StructureCollection object
StructureCollection-class	StructureCollection: An S4 class to represent a collection of...
StructureData	Create StructureData object
StructureData-class	StructureData: An S4 class to represent input data for...
StructureOpts	Create StructureOpts object
StructureOpts-class	StructureOpts: An S4 class to represent Structure parameters
StructureReplicate	Create StructureReplicate object
StructureReplicate-class	StructureReplicate: An S4 class to results from Structure
StructureResults	Create StructureResults object
StructureResults-class	StructureResults: An S4 class to results from Structure
traceplot	Traceplot
write.ClumppOpts	Write Clumpp parameters to file
write.ClumppReplicates	Write replicate data to file for clumpp
write.StructureData	Write data for Structure
write.StructureOpts	Write Structure parameters to file