sample.membership: Sample membership

In jeffreyhanson/structurer: Structure Analysis in R

Description

This function returns the membership of samples in a Structure object.

Usage

sample.membership(x, threshold, ...)

## S3 method for class 'StructureReplicate'
sample.membership(x)

## S3 method for class 'StructureResults'
sample.membership(x, threshold = NULL, ...)

## S3 method for class 'StructureAnalysis'
sample.membership(x, threshold = NULL, ...)

## S3 method for class 'StructureCollection'
sample.membership(x, threshold = NULL,
  k = x@best, ...)

Arguments

x	StructureReplicate, StructureResults, StructureAnalysis.
threshold	numeric threshold to assign samples to populations. If NULL then probabilities for each population are returned. Defaults to NULL.
...	not used.
k	numeric number of populations to assume. Defaults to the best number according to Evanno's method.

Value

integer.

jeffreyhanson/structurer documentation built on May 19, 2019, 4:01 a.m.