LD.plot: Plot LD vs distance
In jendelman/GWASpoly: Genome-wide Association Studies for Autopolyploids
LD.plot R Documentation
Plot LD vs distance
Description
Plot LD vs distance
Usage
LD.plot(data, max.pair = 10000, dof = 8, max.loci = NULL, position = "bp")
Arguments
data
variable inheriting from class GWASpoly
max.pair
maximum number of r2 pairs for the spline
dof
degrees of freedom for the spline
max.loci
maximum number of markers to use per chromosome
position
"bp" or "cM"
Details
A monotone decreasing, convex spline is fit using R package scam.
Value
ggplot2 object
jendelman/GWASpoly documentation built on Oct. 16, 2024, 5:59 a.m.
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| LD.plot | R Documentation |
Plot LD vs distance
Description
Plot LD vs distance
Usage
LD.plot(data, max.pair = 10000, dof = 8, max.loci = NULL, position = "bp")
Arguments
data |
variable inheriting from class |
max.pair |
maximum number of r2 pairs for the spline |
dof |
degrees of freedom for the spline |
max.loci |
maximum number of markers to use per chromosome |
position |
"bp" or "cM" |
Details
A monotone decreasing, convex spline is fit using R package scam.
Value
ggplot2 object
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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