get.QTL: Extract significant QTL

In jendelman/GWASpoly: Genome-wide Association Studies for Autopolyploids

Extract significant QTL

Description

Output a table with significant markers

Usage

get.QTL(data, traits = NULL, models = NULL, bp.window = NULL)

Arguments

data	Output from set.threshold
traits	Vector of trait names (by default, all traits)
models	Vector of model names (by default, all models)
bp.window	prune output to return only the most significant marker within this window size

Details

To return all significant markers (original behavior of the function), use bp.window=NULL. Assumes input map position in bp.

Value

Data frame with results. Score = -log10(p). Effect = marker effect (not available for the general and diplo-general models because there are multiple effects).

jendelman/GWASpoly documentation built on Oct. 16, 2024, 5:59 a.m.