getNameField: Get Namefield From Read Annotation
In jerry955071/seqtools: What the Package Does (One Line, Title Case)
Description
Usage
Arguments
Examples
Description
This function extract keywords from read annotation.
Usage
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getNameField(object, split = NULL)
## S3 method for class 'SeqFasta'
getNameField(object, split = "=| |[|]")
## S3 method for class 'SeqFastq'
getNameField(object, split = "=| |[|]")
Arguments
object
class 'SeqFastq'/'SeqFasta' object
split
characters to split the annotation line
Examples
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file = system.file('data/ref.fa', package = 'seqtools')
fasta = read.fasta(file)
getNameField(fasta[[1]])
jerry955071/seqtools documentation built on Jan. 10, 2021, 4:41 p.m.
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Description Usage Arguments Examples
Description
This function extract keywords from read annotation.
Usage
1 2 3 4 5 6 7 | getNameField(object, split = NULL)
## S3 method for class 'SeqFasta'
getNameField(object, split = "=| |[|]")
## S3 method for class 'SeqFastq'
getNameField(object, split = "=| |[|]")
|
Arguments
object |
class 'SeqFastq'/'SeqFasta' object |
split |
characters to split the annotation line |
Examples
1 2 3 | file = system.file('data/ref.fa', package = 'seqtools')
fasta = read.fasta(file)
getNameField(fasta[[1]])
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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