setNameField: Set Namefield of a Read

In jerry955071/seqtools: What the Package Does (One Line, Title Case)

Description

This function extend/rewrite read

Usage

setNameField(object, method = NULL, keyValue = NULL, sep = NULL)

## S3 method for class 'SeqFasta'
setNameField(object, method = "e", keyValue = NULL, sep = " ")

## S3 method for class 'SeqFastq'
setNameField(object, method = "e", keyValue = NULL, sep = " ")

Arguments

object	class 'SeqFastq'/'SeqFasta' object
method	'r': rewrite, 'e': extend
keyValue	list(key = value)

Examples

file = system.file('data/ref.fa', package = 'seqtools')
fasta = read.fasta(file)
getNameField(fasta[[1]])
fasta[[1]] = setNameField(fasta[[1]], method = 'e', keyValue = list(newkey = 'value'))
fasta[[1]]

jerry955071/seqtools documentation built on Jan. 10, 2021, 4:41 p.m.