add_collection_date: Add Specimen Collection Date to a Report Date Tibble

In jesse-smith/coviData: COVID-19 Data Munging Tools for the Shelby County Health Department

Add Specimen Collection Date to a Report Date Tibble

Description

add_collection_date() reads the specimen collection date column from an NBS data file and adds it to the input data (typically the result of coalesce_report_date()).

Usage

add_collection_date(
  .data,
  .from_col = "specimen_coll_dt",
  .id_col = "inv_local_id",
  ...,
  date = Sys.Date(),
  from_file = path_create("V:/EPI DATA ANALYTICS TEAM/COVID SANDBOX REDCAP Data/",
    "Sandbox data pull Final/")
)

Arguments

.data	A tibble returned from coalesce_report_date()
.from_col	A string indicating the variable in .from_file to use as specimen collection date
.id_col	A string indicating the variable in .data and from_file to use as an ID variable
...	<tidy-select> Additional variables to add
date	The date of the NBS file to use for collection dates
from_file	A file path to the NBS data with the desired specimen collection dates; if only a directory is provided, the NBS file corresponding to date will be used

jesse-smith/coviData documentation built on Jan. 14, 2023, 11:08 a.m.