raid_barcode_count: Count the number of unique UMI per Barcode_1 and Barcode_2...
In jessievb/RAID: Split barcoded FASTQ files and analyse data from the iSeq method
Description
Count the number of unique UMI per Barcode_1 and Barcode_2 columns.
The data table that should be used is the iSeq_UMI_count table, which
contains all the unique (collapsed) UMI,
barcode_1 and barcode_2 information. The column row_occurence_count can be
ignored.
Usage
1
2
raid_barcode_count(split_data_file_path, UMI_count_tbl = UMI_count,
output_filename = "output/data/barcode_count_")
jessievb/RAID documentation built on May 16, 2019, 11:08 a.m.
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Description
Count the number of unique UMI per Barcode_1 and Barcode_2 columns. The data table that should be used is the iSeq_UMI_count table, which contains all the unique (collapsed) UMI, barcode_1 and barcode_2 information. The column row_occurence_count can be ignored.
Usage
1 2 | raid_barcode_count(split_data_file_path, UMI_count_tbl = UMI_count,
output_filename = "output/data/barcode_count_")
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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