raid_import_split_data: # Function for UMI analysis from iSeq split data table....
In jessievb/RAID: Split barcoded FASTQ files and analyse data from the iSeq method
Description
# Count the duplicate UMI in the whole file & filter duplicates.
Three functions are defined:
1. import the split reads into the R environment
2. count the occurence of a specific row (which contains 1 read)
3. count the frequency of the occurences (direct usable for UMI frequency
plot)
Usage
1
raid_import_split_data(split_data_file_path)
Details
Function 2 and 3 each save a TSV file in the output/data/ folder .
jessievb/RAID documentation built on May 16, 2019, 11:08 a.m.
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Description
# Count the duplicate UMI in the whole file & filter duplicates. Three functions are defined: 1. import the split reads into the R environment 2. count the occurence of a specific row (which contains 1 read) 3. count the frequency of the occurences (direct usable for UMI frequency plot)
Usage
1 | raid_import_split_data(split_data_file_path)
|
Details
Function 2 and 3 each save a TSV file in the output/data/ folder .
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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