clust_lev: clust_lev

In jfores/SurvMap: Mapper Survival Analysis for Transcriptomic Data

clust_lev

Description

Get clusters for a particular data level.

Usage

clust_lev(
  dis_est_mod_lev,
  distance_type = "cor",
  clust_type = "hierarchical",
  linkage_type = "single",
  optimal_clust_mode = "standard",
  n_bins_clust = 10,
  level_name = "level_1"
)

Arguments

dis_est_mod_lev	Disease estate data for the whole datasets and the selected genes.
distance_type	Type of distance , correlation, euclidean...
optimal_clust_mode	Method for selection optimal number of clusters. For the moment only the standard method has been implemented.
n_bins_clust	Number of bins in order to select the optimal threshold for number of cluster computations.
level_name	Name of the studied level.

Value

Returns the samples included in each cluster for the specific level analyzed.

Examples

## Not run: 
clust_lev(dis_est_mod_lev,distance_type,optimal_clust_mode,n_bins_clust,level_name)
## End(Not run)

jfores/SurvMap documentation built on May 30, 2022, 10:57 p.m.