perform_GSVA_dataset: perform_GSVA_dataset

In jfores/SurvMap: Mapper Survival Analysis for Transcriptomic Data

perform_GSVA_dataset

Description

Carries out GSVA for the complete dataset and camputes the averange values by pathways and group of samples.

Usage

perform_GSVA_dataset(
  expression,
  surv_Map_Out,
  path_to_gmt_file,
  thr_groups = 20
)

Arguments

expression	Gene expression matrix.
surv_Map_Out	Output from SurvMap analyses.
path_to_gmt_file	Pathway to the gtm file containing the pathways atabase.
thr_groups	threshold of the number of samples used to filter out small nodes.

Examples

## Not run: 
perform_GSVA_dataset(expression,surv_Map_Out,path_to_gmt_file,thr_groups = 20)

## End(Not run)

jfores/SurvMap documentation built on May 30, 2022, 10:57 p.m.