vegan_stand: Standardize a Phyloseq OTU Table
In jfq3/QsRutils: R Functions Useful for Community Ecology
Description
Usage
Arguments
Value
Description
Applies any vegan decostand standardization method to a phyloseq OTU table.
Usage
1
vegan_stand(physeq, method = "hellinger", ...)
Arguments
physeq
A phyloseq object containing at least an OTU table.
method
A method from vegan's decostand function.
...
Other parameters passed to vegan's decostand function.
Value
Returns a phyloseq object with transformed OTU table.
jfq3/QsRutils documentation built on Jan. 18, 2021, 12:40 a.m.
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Description Usage Arguments Value
Description
Applies any vegan decostand standardization method to a phyloseq OTU table.
Usage
1 | vegan_stand(physeq, method = "hellinger", ...)
|
Arguments
physeq |
A phyloseq object containing at least an OTU table. |
method |
A method from vegan's decostand function. |
... |
Other parameters passed to vegan's decostand function. |
Value
Returns a phyloseq object with transformed OTU table.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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