comp_comparisons: Make Comparisons
In jfq3/QsRutils: R Functions Useful for Community Ecology
Description
Usage
Arguments
Value
View source: R/comp_comparisons.R
Description
Calculates the treatment comparison portion of a table comparing relative abundances of each taxon among treatments.
Usage
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comp_comparisons(
otu.pc,
otu.pc.trans,
grps,
p.adjust.method = "BH",
pool.sd = FALSE
)
Arguments
otu.pc
An OTU table of percentages.
otu.pc.trans
An OTU table of transfromed data.
grps
A vector of treatemnt groups for which to make comparisons.
p.adjust.method
Adjustment method for multiple comparisons.
pool.sd
A logical, whether or not to pool standard deviations.
Value
A data frame of differences in relative abundances among treatments.
jfq3/QsRutils documentation built on Jan. 18, 2021, 12:40 a.m.
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Description Usage Arguments Value
View source: R/comp_comparisons.R
Description
Calculates the treatment comparison portion of a table comparing relative abundances of each taxon among treatments.
Usage
1 2 3 4 5 6 7 | comp_comparisons(
otu.pc,
otu.pc.trans,
grps,
p.adjust.method = "BH",
pool.sd = FALSE
)
|
Arguments
otu.pc |
An OTU table of percentages. |
otu.pc.trans |
An OTU table of transfromed data. |
grps |
A vector of treatemnt groups for which to make comparisons. |
p.adjust.method |
Adjustment method for multiple comparisons. |
pool.sd |
A logical, whether or not to pool standard deviations. |
Value
A data frame of differences in relative abundances among treatments.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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