jfukuyama/phyloseqGraphTest: Graph-Based Permutation Tests for Microbiome Data

Provides functions for graph-based multiple-sample testing and visualization of microbiome data, in particular data stored in 'phyloseq' objects. The tests are based on those described in Friedman and Rafsky (1979) <http://www.jstor.org/stable/2958919>, and the tests are described in more detail in Callahan et al. (2016) <doi:10.12688/f1000research.8986.1>.

Getting started

Package details

AuthorJulia Fukuyama [aut, cre]
MaintainerJulia Fukuyama <[email protected]>
LicenseCC0
Version0.0.2
URL https://github.com/jfukuyama/phyloseqGraphTest
Package repositoryView on GitHub
Installation Install the latest version of this package by entering the following in R:
install.packages("devtools")
library(devtools)
install_github("jfukuyama/phyloseqGraphTest")
jfukuyama/phyloseqGraphTest documentation built on May 28, 2018, 2:10 p.m.