plot_permutations: Plots the permutation distribution
In jfukuyama/phyloseqGraphTest: Graph-Based Permutation Tests for Microbiome Data
View source: R/graphtest-functions.R
plot_permutations R Documentation
Plots the permutation distribution
Description
Plots a histogram of the permutation distribution of the number of
pure edges and a mark showing the observed number of pure edges.
Usage
plot_permutations(graphtest, bins = 30)
Arguments
graphtest
The output from graph_perm_test.
bins
The number of bins to use for the histogram.
Value
A ggplot object.
Examples
library(phyloseq)
data(enterotype)
gt = graph_perm_test(enterotype, sampletype = "SeqTech")
plot_permutations(gt)
jfukuyama/phyloseqGraphTest documentation built on Feb. 11, 2024, 4:09 a.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
View source: R/graphtest-functions.R
| plot_permutations | R Documentation |
Plots the permutation distribution
Description
Plots a histogram of the permutation distribution of the number of pure edges and a mark showing the observed number of pure edges.
Usage
plot_permutations(graphtest, bins = 30)
Arguments
graphtest |
The output from graph_perm_test. |
bins |
The number of bins to use for the histogram. |
Value
A ggplot object.
Examples
library(phyloseq)
data(enterotype)
gt = graph_perm_test(enterotype, sampletype = "SeqTech")
plot_permutations(gt)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.