boot.ppfst: Performs bootstrapping over loci of pairwise Fst

In jgx65/hierfstat: Estimation and Tests of Hierarchical F-Statistics

Performs bootstrapping over loci of pairwise Fst

Description

Performs bootstrapping over loci of pairwise Fst using Weir and Cockerham (1984) estimator of Fst

Usage

boot.ppfst(dat=dat,nboot=100,quant=c(0.025,0.975),diploid=TRUE,...)

Arguments

dat	a genetic data frame
nboot	number of bootstraps
quant	the quantiles for bootstrapped ci
diploid	whether data are from diploid organisms
...	further arguments to pass to the function

Value

call	call to the function
ll	lower limit ci
ul	upper limit ci
vc.per.loc	for each pair of population, the variance components per locus

Author(s)

Jerome Goudet [e-mail]

Examples

data(gtrunchier)
x<-boot.ppfst(gtrunchier[,-2])
x$ll
x$ul

jgx65/hierfstat documentation built on April 20, 2023, 8:34 a.m.