pairwise.WCfst: Estimates pairwise FSTs according to Weir and Cockerham...
In jgx65/hierfstat: Estimation and Tests of Hierarchical F-Statistics
pairwise.WCfst R Documentation
Estimates pairwise FSTs according to Weir and Cockerham (1984)
Description
Estimates pairwise FSTs according to Weir and Cockerham (1984)
Usage
pairwise.WCfst(dat,diploid=TRUE)
Arguments
dat
A data frame containing population of origin as the first column
and multi-locus genotypes in following columns
diploid
whether the data is from a diploid (default) or haploid organism
Details
FST are calculated using Weir & Cockerham (1984) equations for FST', as described in the note section of wc
Value
A matrix of pairwise FSTs
Author(s)
Jerome Goudet jerome.goudet@unil.ch
References
Weir, B.S. (1996) Genetic Data Analysis II. Sinauer Associates.
Weir B.S. and Cockerham C.C. (1984) Estimating F-Statistics for the Analysis of Population Structure. Evolution 38:1358
See Also
pairwise.neifst genet.dist
Examples
data(gtrunchier)
pairwise.WCfst(gtrunchier[,-2],diploid=TRUE)
jgx65/hierfstat documentation built on April 20, 2023, 8:34 a.m.
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| pairwise.WCfst | R Documentation |
Estimates pairwise FSTs according to Weir and Cockerham (1984)
Description
Estimates pairwise FSTs according to Weir and Cockerham (1984)
Usage
pairwise.WCfst(dat,diploid=TRUE)
Arguments
dat |
A data frame containing population of origin as the first column and multi-locus genotypes in following columns |
diploid |
whether the data is from a diploid (default) or haploid organism |
Details
FST are calculated using Weir & Cockerham (1984) equations for FST', as described in the note section of wc
Value
A matrix of pairwise FSTs
Author(s)
Jerome Goudet jerome.goudet@unil.ch
References
Weir, B.S. (1996) Genetic Data Analysis II. Sinauer Associates.
Weir B.S. and Cockerham C.C. (1984) Estimating F-Statistics for the Analysis of Population Structure. Evolution 38:1358
See Also
pairwise.neifst genet.dist
Examples
data(gtrunchier)
pairwise.WCfst(gtrunchier[,-2],diploid=TRUE)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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