Man pages for jhbadger/cipphyloseq
Adds Additional Features (plots, DESeq2) to phyloseq
| auto_bracket | Adds a bracket automatically with a label to annotate a... |
| boxplot_biom | Make a boxplot of significant OTUs found with my_deseq2 |
| deseq2_biom | Run DESeq2 on a phyloseq object and return tibble of... |
| donut_biom | Make a donut graph of two taxonomic levels |
| heatmap_biom | Make a heat map of a biom object with clustering |
| mr2phyloseq | Convert metagenomeSeq to phyloseq |
| my_bracket | Adds a bracket with a label to annotate a ggplot2 plot |
| pcoa_biom | Make a scatter PCA/PCOA plot of phyloseq object |
| pcoa_subset_biom | Make a scatter PCA/PCOA plot of phyloseq object with complete... |
| plot_bar2 | More flexible version of phyloseq's plot_bar |
| qiime2MR | Load QIIME2 data into metagenomeSeq |
| yams2phyloseq | Create a phyloseq Object from YAMS16 output |
