yams2phyloseq: Create a phyloseq Object from YAMS16 output

In jhbadger/cipphyloseq: Adds Additional Features (plots, DESeq2) to phyloseq

Description

Create a phyloseq Object from YAMS16 output

Usage

yams2phyloseq(counts, taxa, metadata = NULL, tree = NULL,
  ppm = FALSE)

Arguments

counts	unit_table.tsv count data
taxa	taxa_16S_cons.tsv taxonomy data
metadata	optional metadata csv/tsv
tree	optional tree for Unifrac computation.
ppm	convert to parts per million

Examples

yams2phyloseq()

jhbadger/cipphyloseq documentation built on May 24, 2019, 2:04 a.m.