Files in jhrcook/wext
Weighted Exclusivity Test (WExT)

.Rbuildignore
.Rprofile
.gitignore
.travis.yml
DESCRIPTION
LICENSE.md
NAMESPACE
NEWS.md R/RcppExports.R R/bipartite_edge_swap.R R/bipartite_edge_swap2.R R/bipartite_edge_swap3.R R/calculate_events.R R/calculate_row_col_exclusivity_weights.R R/calculate_row_exclusivity_weights.R R/calculate_weighted_row_exclusivity_weights.R R/data.R R/filter_by_mutation_frequency.R R/make_empty_results_tracker.R R/make_sample_gene_bipartite.R R/matrix_to_tibble.R R/random_edge_nodes.R R/rc_test.R R/recursive_solver.R R/remove_edge.R R/utilities.R R/wext-package.R R/zzz.R README.Rmd README.md
_pkgdown.yml
appveyor.yml
codecov.yml
data-raw/simple_dataset.R
data/simple_dataset.rda
docs/LICENSE.html
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docs/apple-touch-icon-152x152.png
docs/apple-touch-icon-180x180.png
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docs/apple-touch-icon.png
docs/articles/compare_rc_to_fisher.html
docs/articles/compare_rc_to_fisher_files/figure-html/plot_diff-1.png
docs/articles/compare_rc_to_fisher_files/figure-html/plot_pvals-1.png
docs/articles/compare_rc_to_fisher_files/figure-html/viz_data-1.png
docs/articles/comparing_swappers.html
docs/articles/computing_probabilities.html
docs/articles/index.html
docs/articles/rc_exclusivity_nulldist.html
docs/articles/simple-example.html
docs/articles/simpleexample-hardway.html
docs/articles/statistics.html
docs/authors.html
docs/docsearch.css
docs/docsearch.js
docs/favicon-16x16.png
docs/favicon-32x32.png
docs/favicon.ico
docs/index.html
docs/link.svg
docs/logo.png
docs/news/index.html
docs/pkgdown.css
docs/pkgdown.js
docs/pkgdown.yml
docs/reference/bipartite_edge_swap.html
docs/reference/bipartite_edge_swap2.html
docs/reference/bipartite_edge_swap3.html
docs/reference/bipartite_edgelist.html
docs/reference/calculate_events-1.png
docs/reference/calculate_events.html
docs/reference/calculate_row_col_exclusivity_weights.html
docs/reference/calculate_row_exclusivity_weights.html
docs/reference/calculate_weighted_row_exclusivity_weights.html
docs/reference/check_gr.html
docs/reference/figures/logo.png
docs/reference/filter_by_mutation_frequency.html
docs/reference/get_node_index.html
docs/reference/hello.html
docs/reference/index.html
docs/reference/make_sample_gene_bipartite.html
docs/reference/matrix_to_tibble.html
docs/reference/random_edge_nodes.html
docs/reference/rc_test.html
docs/reference/remove_edge-1.png
docs/reference/remove_edge.html
docs/reference/results_tracker.html
docs/reference/simple_dataset.html
docs/reference/swap_an_edge-1.png
docs/reference/swap_an_edge.html
docs/reference/swap_an_edge2-1.png
docs/reference/swap_an_edge2.html
docs/reference/swap_an_edgeC.html
docs/reference/wext.html
inst/WORDLIST
man/bipartite_edge_swap.Rd man/bipartite_edge_swap2.Rd man/bipartite_edge_swap3.Rd man/bipartite_edgelist.Rd man/calculate_events.Rd man/calculate_row_col_exclusivity_weights.Rd man/calculate_row_exclusivity_weights.Rd man/calculate_weighted_row_exclusivity_weights.Rd man/check_gr.Rd
man/figures/logo.png
man/filter_by_mutation_frequency.Rd man/get_node_index.Rd man/make_sample_gene_bipartite.Rd man/matrix_to_tibble.Rd man/random_edge_nodes.Rd man/rc_test.Rd man/remove_edge.Rd man/results_tracker.Rd man/simple_dataset.Rd man/swap_an_edge.Rd man/swap_an_edge2.Rd man/swap_an_edgeC.Rd man/wext.Rd packrat/init.R
packrat/packrat.lock
packrat/packrat.opts
packrat/src/packrat/packrat_0.5.0.tar.gz
pkgdown/favicon/apple-touch-icon-120x120.png
pkgdown/favicon/apple-touch-icon-152x152.png
pkgdown/favicon/apple-touch-icon-180x180.png
pkgdown/favicon/apple-touch-icon-60x60.png
pkgdown/favicon/apple-touch-icon-76x76.png
pkgdown/favicon/apple-touch-icon.png
pkgdown/favicon/favicon-16x16.png
pkgdown/favicon/favicon-32x32.png
pkgdown/favicon/favicon.ico
raphael_examples/README.md
raphael_examples/generate_data.py
raphael_examples/pancan/.gitignore
raphael_examples/pancan/Makefile
raphael_examples/pancan/README.md raphael_examples/simple/README.md
raphael_examples/simple/adjacency_list.tsv
raphael_examples/simple/commands.sh
src/.gitignore
src/RcppExports.cpp
src/swap_an_edgeC.cpp
tests/spelling.R tests/testthat.R tests/testthat/test-bipartite_edge_swap.R tests/testthat/test-bipartite_edge_swap2.R tests/testthat/test-bipartite_edge_swap3.R tests/testthat/test-calculate_events.R tests/testthat/test-calculate_row_col_exclusivity_weights.R tests/testthat/test-calculate_row_exclusivity_weights.R tests/testthat/test-check_gr.R tests/testthat/test-make_empty_results_tracker.R tests/testthat/test-make_sample_gene_bipartite.R tests/testthat/test-matrix_to_tibble.R tests/testthat/test-rc_test.R tests/testthat/test-utilities.R
vignettes/.gitignore
vignettes/compare_rc_to_fisher.Rmd
vignettes/compare_rc_to_fisher_cache/html/__packages
vignettes/compare_rc_to_fisher_cache/html/rc_test_b1d61501a67fa66b2e3e6d20663e6cd6.RData
vignettes/compare_rc_to_fisher_cache/html/rc_test_b1d61501a67fa66b2e3e6d20663e6cd6.rdb
vignettes/compare_rc_to_fisher_cache/html/rc_test_b1d61501a67fa66b2e3e6d20663e6cd6.rdx
vignettes/comparing_swappers.Rmd
vignettes/comparing_swappers_cache/html/__packages
vignettes/comparing_swappers_cache/html/bench_method1_ce9d3b01ed559c85fece77a1fcdc76c8.RData
vignettes/comparing_swappers_cache/html/bench_method1_ce9d3b01ed559c85fece77a1fcdc76c8.rdb
vignettes/comparing_swappers_cache/html/bench_method1_ce9d3b01ed559c85fece77a1fcdc76c8.rdx
vignettes/comparing_swappers_cache/html/bench_method2_9cdb93a65c6b608281f7aa5a5b8b81c3.RData
vignettes/comparing_swappers_cache/html/bench_method2_9cdb93a65c6b608281f7aa5a5b8b81c3.rdb
vignettes/comparing_swappers_cache/html/bench_method2_9cdb93a65c6b608281f7aa5a5b8b81c3.rdx
vignettes/comparing_swappers_cache/html/bench_methodC_4093f327f9f825df265365f4af23a59f.RData
vignettes/comparing_swappers_cache/html/bench_methodC_4093f327f9f825df265365f4af23a59f.rdb
vignettes/comparing_swappers_cache/html/bench_methodC_4093f327f9f825df265365f4af23a59f.rdx
vignettes/computing_probabilities.Rmd vignettes/simpleexample-hardway.Rmd
vignettes/simpleexample-hardway_cache/html/__packages
vignettes/simpleexample-hardway_cache/html/calc_WRC_6b09a8b7be6d0e8cef2c7271698ba10c.RData
vignettes/simpleexample-hardway_cache/html/calc_WRC_6b09a8b7be6d0e8cef2c7271698ba10c.rdb
vignettes/simpleexample-hardway_cache/html/calc_WRC_6b09a8b7be6d0e8cef2c7271698ba10c.rdx
vignettes/statistics.Rmd
wext.Rproj
jhrcook/wext documentation built on June 13, 2019, 7:30 p.m.