Files in jhrcook/wext

Weighted Exclusivity Test (WExT)

.Rbuildignore

.Rprofile

.gitignore

.travis.yml

DESCRIPTION

LICENSE.md

NAMESPACE

NEWS.md R/RcppExports.R R/bipartite_edge_swap.R R/bipartite_edge_swap2.R R/bipartite_edge_swap3.R R/calculate_events.R R/calculate_row_col_exclusivity_weights.R R/calculate_row_exclusivity_weights.R R/calculate_weighted_row_exclusivity_weights.R R/data.R R/filter_by_mutation_frequency.R R/make_empty_results_tracker.R R/make_sample_gene_bipartite.R R/matrix_to_tibble.R R/random_edge_nodes.R R/rc_test.R R/recursive_solver.R R/remove_edge.R R/utilities.R R/wext-package.R R/zzz.R README.Rmd README.md

_pkgdown.yml

appveyor.yml

codecov.yml

data-raw/simple_dataset.R

data/simple_dataset.rda

docs/LICENSE.html

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docs/articles/compare_rc_to_fisher.html

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docs/articles/comparing_swappers.html

docs/articles/computing_probabilities.html

docs/articles/index.html

docs/articles/rc_exclusivity_nulldist.html

docs/articles/simple-example.html

docs/articles/simpleexample-hardway.html

docs/articles/statistics.html

docs/authors.html

docs/docsearch.css

docs/docsearch.js

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docs/favicon.ico

docs/index.html

docs/link.svg

docs/logo.png

docs/news/index.html

docs/pkgdown.css

docs/pkgdown.js

docs/pkgdown.yml

docs/reference/bipartite_edge_swap.html

docs/reference/bipartite_edge_swap2.html

docs/reference/bipartite_edge_swap3.html

docs/reference/bipartite_edgelist.html

docs/reference/calculate_events-1.png

docs/reference/calculate_events.html

docs/reference/calculate_row_col_exclusivity_weights.html

docs/reference/calculate_row_exclusivity_weights.html

docs/reference/calculate_weighted_row_exclusivity_weights.html

docs/reference/check_gr.html

docs/reference/figures/logo.png

docs/reference/filter_by_mutation_frequency.html

docs/reference/get_node_index.html

docs/reference/hello.html

docs/reference/index.html

docs/reference/make_sample_gene_bipartite.html

docs/reference/matrix_to_tibble.html

docs/reference/random_edge_nodes.html

docs/reference/rc_test.html

docs/reference/remove_edge-1.png

docs/reference/remove_edge.html

docs/reference/results_tracker.html

docs/reference/simple_dataset.html

docs/reference/swap_an_edge-1.png

docs/reference/swap_an_edge.html

docs/reference/swap_an_edge2-1.png

docs/reference/swap_an_edge2.html

docs/reference/swap_an_edgeC.html

docs/reference/wext.html

inst/WORDLIST

man/bipartite_edge_swap.Rd man/bipartite_edge_swap2.Rd man/bipartite_edge_swap3.Rd man/bipartite_edgelist.Rd man/calculate_events.Rd man/calculate_row_col_exclusivity_weights.Rd man/calculate_row_exclusivity_weights.Rd man/calculate_weighted_row_exclusivity_weights.Rd man/check_gr.Rd

man/figures/logo.png

man/filter_by_mutation_frequency.Rd man/get_node_index.Rd man/make_sample_gene_bipartite.Rd man/matrix_to_tibble.Rd man/random_edge_nodes.Rd man/rc_test.Rd man/remove_edge.Rd man/results_tracker.Rd man/simple_dataset.Rd man/swap_an_edge.Rd man/swap_an_edge2.Rd man/swap_an_edgeC.Rd man/wext.Rd packrat/init.R

packrat/packrat.lock

packrat/packrat.opts

packrat/src/packrat/packrat_0.5.0.tar.gz

pkgdown/favicon/apple-touch-icon-120x120.png

pkgdown/favicon/apple-touch-icon-152x152.png

pkgdown/favicon/apple-touch-icon-180x180.png

pkgdown/favicon/apple-touch-icon-60x60.png

pkgdown/favicon/apple-touch-icon-76x76.png

pkgdown/favicon/apple-touch-icon.png

pkgdown/favicon/favicon-16x16.png

pkgdown/favicon/favicon-32x32.png

pkgdown/favicon/favicon.ico

raphael_examples/README.md

raphael_examples/generate_data.py

raphael_examples/pancan/.gitignore

raphael_examples/pancan/Makefile

raphael_examples/pancan/README.md raphael_examples/simple/README.md

raphael_examples/simple/adjacency_list.tsv

raphael_examples/simple/commands.sh

src/.gitignore

src/RcppExports.cpp

src/swap_an_edgeC.cpp

tests/spelling.R tests/testthat.R tests/testthat/test-bipartite_edge_swap.R tests/testthat/test-bipartite_edge_swap2.R tests/testthat/test-bipartite_edge_swap3.R tests/testthat/test-calculate_events.R tests/testthat/test-calculate_row_col_exclusivity_weights.R tests/testthat/test-calculate_row_exclusivity_weights.R tests/testthat/test-check_gr.R tests/testthat/test-make_empty_results_tracker.R tests/testthat/test-make_sample_gene_bipartite.R tests/testthat/test-matrix_to_tibble.R tests/testthat/test-rc_test.R tests/testthat/test-utilities.R

vignettes/.gitignore

vignettes/compare_rc_to_fisher.Rmd

vignettes/compare_rc_to_fisher_cache/html/__packages

vignettes/compare_rc_to_fisher_cache/html/rc_test_b1d61501a67fa66b2e3e6d20663e6cd6.RData

vignettes/compare_rc_to_fisher_cache/html/rc_test_b1d61501a67fa66b2e3e6d20663e6cd6.rdb

vignettes/compare_rc_to_fisher_cache/html/rc_test_b1d61501a67fa66b2e3e6d20663e6cd6.rdx

vignettes/comparing_swappers.Rmd

vignettes/comparing_swappers_cache/html/__packages

vignettes/comparing_swappers_cache/html/bench_method1_ce9d3b01ed559c85fece77a1fcdc76c8.RData

vignettes/comparing_swappers_cache/html/bench_method1_ce9d3b01ed559c85fece77a1fcdc76c8.rdb

vignettes/comparing_swappers_cache/html/bench_method1_ce9d3b01ed559c85fece77a1fcdc76c8.rdx

vignettes/comparing_swappers_cache/html/bench_method2_9cdb93a65c6b608281f7aa5a5b8b81c3.RData

vignettes/comparing_swappers_cache/html/bench_method2_9cdb93a65c6b608281f7aa5a5b8b81c3.rdb

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vignettes/comparing_swappers_cache/html/bench_methodC_4093f327f9f825df265365f4af23a59f.rdb

vignettes/comparing_swappers_cache/html/bench_methodC_4093f327f9f825df265365f4af23a59f.rdx

vignettes/computing_probabilities.Rmd vignettes/simpleexample-hardway.Rmd

vignettes/simpleexample-hardway_cache/html/__packages

vignettes/simpleexample-hardway_cache/html/calc_WRC_6b09a8b7be6d0e8cef2c7271698ba10c.RData

vignettes/simpleexample-hardway_cache/html/calc_WRC_6b09a8b7be6d0e8cef2c7271698ba10c.rdb

vignettes/simpleexample-hardway_cache/html/calc_WRC_6b09a8b7be6d0e8cef2c7271698ba10c.rdx

vignettes/statistics.Rmd

wext.Rproj

jhrcook/wext documentation built on May 17, 2021, 1:19 a.m.