GAPIT.SUPER.GS: GAPIT.SUPER.GS

In jiabowang/GAPIT3: GAPIT (Genomic Association and Prediction Integrated Tool)

GAPIT.SUPER.GS

Description

Perform GPS with SUPER and Compress method.

Usage

GAPIT.SUPER.GS(
  Y,
  GD = NULL,
  GM = NULL,
  KI = NULL,
  Z = NULL,
  CV = NULL,
  GK = NULL,
  kinship.algorithm = NULL,
  bin.from = 10000,
  bin.to = 10000,
  bin.by = 1000,
  inclosure.from = 10,
  inclosure.to = 10,
  inclosure.by = 10,
  group.from = 1e+06,
  group.to = 1e+06,
  group.by = 10,
  kinship.cluster = "average",
  kinship.group = "Mean",
  PCA.total = 0,
  GT = NULL,
  PC = NULL,
  GI = NULL,
  Timmer = NULL,
  Memory = NULL,
  model = "",
  sangwich.top = NULL,
  sangwich.bottom = NULL,
  QC = TRUE,
  GTindex = NULL,
  LD = 0.05,
  file.output = TRUE,
  cutOff = 0.01
)

Arguments

Y	Phenotype data.frame,
GD	= NULL,
GM	= NULL,
KI	= NULL,
Z	= NULL,
CV	= NULL,
GK	= NULL,
kinship.algorithm	= NULL,
bin.from	= 10000,
bin.to	= 10000,
bin.by	= 1000,
inclosure.from	= 10,
inclosure.to	= 10,
inclosure.by	= 10,
group.from	= 1000000,
group.to	= 1000000,
group.by	= 10,
kinship.cluster	= "average",
kinship.group	= 'Mean',
PCA.total	= 0,
GT	= NULL,
PC	= NULL,
GI	= NULL,
Timmer	= NULL,
Memory	= NULL,
model	= "",
sangwich.top	= NULL,
sangwich.bottom	= NULL,
QC	= TRUE,
GTindex	= NULL,
LD	= 0.05,
file.output	= TRUE,
cutOff	= 0.01

Author(s)

Zhiwu Zhang and Jiabo Wang

jiabowang/GAPIT3 documentation built on March 6, 2025, 2:21 a.m.