API for jianhaizhang/spatialHeatmap
spatialHeatmap: Visualizing Spatial Assays in Anatomical Images and Large-Scale Data Extensions
| Global functions | |
|---|---|
| SPHM | Man page Source code |
| SPHM-class | Man page |
| SPHMMethods | Man page |
| SVG | Man page Source code |
| SVG-class | Man page |
| SVGMethods | Man page |
| SpatialEnrichment | Man page |
| [,SPHM,ANY,ANY,ANY-method | Man page |
| [,SVG,ANY,ANY,ANY-method | Man page |
| [<-,SPHM,ANY,ANY,ANY-method | Man page |
| [<-,SVG,ANY,ANY,ANY-method | Man page |
| aSVG.remote.repo | Man page |
| adj_mod | Man page Source code |
| aggr_rep | Man page Source code |
| align | Source code |
| angle | Man page |
| angle,SVG-method | Man page |
| angle<- | Man page |
| angle<-,SVG-method | Man page |
| attribute | Man page |
| attribute,SVG-method | Man page |
| attribute<- | Man page |
| attribute<-,SVG-method | Man page |
| bulk | Man page |
| bulk,SPHM-method | Man page |
| bulk<- | Man page |
| bulk<-,SPHM-method | Man page |
| cal_cpm | Source code |
| cbind_se | Source code |
| cell | Man page |
| cell,SPHM-method | Man page |
| cell<- | Man page |
| cell<-,SPHM-method | Man page |
| cell_group | Man page Source code |
| check_SPHM | Source code |
| check_SVG | Source code |
| check_dat_db | Source code |
| check_data | Source code |
| check_data_covis | Source code |
| check_decon | Source code |
| check_exp | Source code |
| check_obj | Source code |
| check_pkg | Source code |
| check_sce | Source code |
| check_se | Source code |
| check_srsc | Source code |
| cluster_cell | Man page Source code |
| cmb | Man page |
| cmb,SVG,SVG-method | Man page |
| coclus_fun | Source code |
| coclus_opt | Man page Source code |
| cocluster | Man page Source code |
| col2cell | Source code |
| col_bar | Source code |
| col_check | Source code |
| col_dim_toblk | Source code |
| col_dim_tocell | Source code |
| col_str | Source code |
| com_factor | Man page Source code |
| com_roc | Source code |
| coordinate | Man page |
| coordinate,SVG-method | Man page |
| coordinate<- | Man page |
| coordinate<-,SVG-method | Man page |
| cord | Source code |
| cord_parent | Source code |
| covis | Man page |
| covis,SPHM-method | Man page |
| covis_trans | Source code |
| cp_app | Source code |
| cp_file | Source code |
| custom_shiny | Man page Source code |
| cut_dendro | Man page Source code |
| cvt_id | Man page Source code |
| cvt_vector | Source code |
| dat_fun | Source code |
| data_ref | Man page Source code |
| database | Man page |
| deg_ovl_mat | Source code |
| deseq2 | Source code |
| desired_bulk_shiny | Man page Source code |
| detect_cluster | Source code |
| deter_core | Source code |
| df_is_as | Source code |
| diff_cols | Source code |
| dim_color | Source code |
| dim_color2cell | Source code |
| dim_color_coclus | Source code |
| dim_color_idp | Source code |
| dim_decon | Source code |
| dim_opt | Source code |
| dim_srsc | Source code |
| dimension | Man page |
| dimension,SVG-method | Man page |
| dimension<- | Man page |
| dimension<-,SVG-method | Man page |
| edgeR | Source code |
| edit_tar | Man page Source code |
| fil_fun | Source code |
| filter_asg | Man page Source code |
| filter_cell | Man page Source code |
| filter_data | Man page Source code |
| gg_2lgd | Source code |
| gg_dat | Source code |
| gg_lgd | Source code |
| gg_shm | Source code |
| graph_line | Man page Source code |
| grob_shm | Source code |
| html_ly | Source code |
| img_pa_na | Source code |
| lay_shm | Source code |
| length | Man page |
| length,SPHM-method | Man page |
| length,SVG-method | Man page |
| lgd_com | Source code |
| limma | Source code |
| mapping_sum | Source code |
| match | Man page |
| match,SPHM-method | Man page |
| match<- | Man page |
| match<-,SPHM-method | Man page |
| matrix_hm | Man page Source code |
| modal | Source code |
| name | Man page |
| name,SPHM-method | Man page |
| names | Man page |
| names,SVG-method | Man page |
| names<-,SVG-method | Man page |
| network | Man page Source code |
| nn_graph | Source code |
| nod_lin | Source code |
| norm_cell | Man page Source code |
| norm_data | Man page Source code |
| norm_fun | Source code |
| norm_opt | Source code |
| norm_srsc | Man page Source code |
| opt_bar | Man page Source code |
| opt_dir | Source code |
| opt_setting | Man page Source code |
| opt_violin | Man page Source code |
| optimal_k | Man page Source code |
| out_ply | Source code |
| output | Man page |
| output,SPHM-method | Man page |
| output<- | Man page |
| output<-,SPHM-method | Man page |
| ovl_dat_db | Source code |
| ovl_enrich | Man page Source code |
| pair2lis | Source code |
| path_br | Source code |
| path_br_all | Source code |
| plot_dim | Man page Source code |
| plot_kmeans | Man page Source code |
| plot_meta | Man page Source code |
| preprocess_sc | Source code |
| process_cell_meta | Man page Source code |
| qc_cell | Man page Source code |
| query_enrich | Man page Source code |
| raster_pa | Man page |
| raster_pa,SVG-method | Man page |
| raster_pa<- | Man page |
| raster_pa<-,SVG-method | Man page |
| raster_path | Source code |
| read_cache | Man page Source code |
| read_fr | Man page Source code |
| read_hdf5 | Man page Source code |
| read_svg | Man page Source code |
| reduce_dim | Man page Source code |
| reduce_rep | Man page Source code |
| refine_asg | Man page Source code |
| rela_size | Source code |
| return_feature | Man page Source code |
| rm_dot | Source code |
| rotate_cord | Source code |
| s4se | Source code |
| save_cache | Man page Source code |
| sc_qc_plot | Source code |
| scale_all | Source code |
| sce_sub | Source code |
| sf_var | Man page Source code |
| shiny_shm | Man page Source code |
| shm | Man page |
| shm,SPHM-method | Man page |
| shm_covis | Source code |
| show_mod | Source code |
| shp | Source code |
| sort_gen_con | Source code |
| spatialHeatmap | Man page |
| spatialHeatmap-package | Man page |
| spatial_enrich | Man page Source code |
| spatial_hm | Man page |
| spatial_hm,SVG-method | Man page |
| srt2sce | Source code |
| sub_na | Source code |
| sub_sf | Man page |
| sub_sf,SVG-method | Man page |
| submatrix | Man page Source code |
| svg | Man page |
| svg,SPHM-method | Man page |
| svg<- | Man page |
| svg<-,SPHM-method | Man page |
| svg_attr | Source code |
| svg_df | Source code |
| svg_obj | Man page |
| svg_obj,SVG-method | Man page |
| svg_obj<- | Man page |
| svg_obj<-,SVG-method | Man page |
| svg_raster | Source code |
| svg_separ | Source code |
| svg_zpath | Source code |
| test_ffm | Source code |
| thrsd | Source code |
| tit_id | Source code |
| true_bulk | Man page Source code |
| up_dn | Source code |
| update_feature | Man page Source code |
| use | Source code |
| value2color | Source code |
| video | Source code |
| wng | Source code |
| write_hdf5 | Man page Source code |
| write_svg | Man page Source code |
| xy | Source code |
| xy0 | Source code |
