NEWS.md

In jianhong/ATACseqTFEA: Transcription Factor Enrichment Analysis for ATAC-seq

Change in 1.5.1

• add function importFimoBindingSites.

Change in 1.1.1

• fix the bugs in sample_scripts.R.

Change in 0.99.9

• Change filename privateUtility to internal-utils.

Change in 0.99.8

• Use ggsave to replace print for plotES.

Change in 0.99.7

• add return descriptions for TFEAresults-methods.

Change in 0.99.6

• add BiocStyle and rmarkdown into Suggests

Change in 0.99.5

• update the license from 'GPL (>=2)' to 'GPL-3'
• add additional sections with guidelines for bug report and contribution in readme.md.
• split the class and method into three files: R/AllClasses.R, R/AllGenerics.R, and methods-TFEAresults.R.
• simplify the show outputs for TFEAresults object
• use loop count no more than MAX_LOOPS to control the nested loops
• return ggplot object for the plotES function
• break the TFEA function into multiple functions
• update muliple documentations.

Change in 0.99.4

• add schematic diagram.

Change in 0.99.3

• replace import by importFrom.

Change in 0.99.2

• remove the import of utils.

Change in 0.99.1

• export function reduceByPercentage
• fix the bug in vignette
• import utils in DESCRIPTION.

Change in 0.99.0

• prepare for submission

jianhong/ATACseqTFEA documentation built on Nov. 5, 2024, 9:46 a.m.