Man pages for jianhong/NADfinder
Call wide peaks for sequencing data

backgroundCorrectionCorrect ratios for background
butterFilterLow pass filter on ratios by butterworth filter
callPeakscall peaks using transformed, background corrected, and...
cumulativePercentagePlot the cumulative percentage tag allocation
exportSignalsoutput signals to file
getCorrelationsget correlations for replicates
groupZscoresCalculate z-scores for each peak
IntersectionNotStrictCount reads overlapping genomic ranges
log2ratiocalculate the log2 transformed ratios
log2secalculate the log2 transformed ratios for...
NADfinder-packageCall peaks for nucleolar-associated domains (NADs) sequencing...
peakdetDetect peak positions
plotSigplot signals with ideograms
single.countcounts data for single experiment of chromosome 18
smoothRatiosByChromosomebackgound correction and smooth by chromosome
tileCountPerform overlap queries between reads and genome by windows
transformDatatransform counts to log2 cpm ratios, log2 ratios or log2 odds...
trimPeaksTrim peaks
triplicates.countscounts data for triplicates of chromosome 18
zscoreOverBckZ-scores over the background
jianhong/NADfinder documentation built on Feb. 22, 2018, 10:11 p.m.