computeLibSizeChrom: Perform overlap queries between reads and genome by sliding...
In jianhong/NADfinder: Call wide peaks for sequencing data
View source: R/tileCount2.R
View source: R/tileCount2.R
View source: R/tileCount.R
computeLibSizeChrom R Documentation
Perform overlap queries between reads and genome by sliding windows
Count reads over sliding windows.
Description
Perform overlap queries between reads and genome by sliding windows
Count reads over sliding windows.
Usage
computeLibSizeChrom(aln_list)
Arguments
aln_list
a list.
Value
A RangedSummarizedExperiment object with chromosome-level depth
The assays slot holds the counts, rowRanges holds the annotation from the
sliding widows of genome.
metadata contains lib.size.chrom for holding chromosome-level sequence depth
Author(s)
Jun Yu,Hervé Pagès and Julie Zhu
jianhong/NADfinder documentation built on Nov. 2, 2024, 12:09 a.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
View source: R/tileCount2.R View source: R/tileCount2.R View source: R/tileCount.R
| computeLibSizeChrom | R Documentation |
Perform overlap queries between reads and genome by sliding windows Count reads over sliding windows.
Description
Perform overlap queries between reads and genome by sliding windows Count reads over sliding windows.
Usage
computeLibSizeChrom(aln_list)
Arguments
aln_list |
a list. |
Value
A RangedSummarizedExperiment object with chromosome-level depth The assays slot holds the counts, rowRanges holds the annotation from the sliding widows of genome. metadata contains lib.size.chrom for holding chromosome-level sequence depth
Author(s)
Jun Yu,Hervé Pagès and Julie Zhu
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.