computeLibSizeChrom: Perform overlap queries between reads and genome by sliding...

View source: R/tileCount2.R View source: R/tileCount2.R View source: R/tileCount.R

computeLibSizeChromR Documentation

Perform overlap queries between reads and genome by sliding windows Count reads over sliding windows.

Description

Perform overlap queries between reads and genome by sliding windows Count reads over sliding windows.

Usage

computeLibSizeChrom(aln_list)

Arguments

aln_list

a list.

Value

A RangedSummarizedExperiment object with chromosome-level depth The assays slot holds the counts, rowRanges holds the annotation from the sliding widows of genome. metadata contains lib.size.chrom for holding chromosome-level sequence depth

Author(s)

Jun Yu,Hervé Pagès and Julie Zhu


jianhong/NADfinder documentation built on May 9, 2024, 2:22 p.m.