plotSig: Plot signals with ideograms

In jianhong/NADfinder: Call wide peaks for sequencing data

Plot signals with ideograms

Description

Plot signals with ideograms for GRangesList.

Usage

plotSig(ideo, grList, mcolName, ...)

Arguments

ideo	Output of loadIdeogram.
grList	A GRangesList of data to plot.
mcolName	Column name of metadata of GRangesList for plotting.
...	Parameters to pass to ideogramPlot

Value

Invisible argument list for ideogramPlot.

Examples

library(trackViewer)
#ideo <- loadIdeogram("mm10")
ideo <- readRDS(system.file("extdata", "ideo.mm10.rds",
                             package = "NADfinder"))
gr1 <- gr2 <- ideo
mcols(gr1) <- DataFrame(score=runif(length(gr1)))
mcols(gr2) <- DataFrame(score=runif(length(gr2)))
grList <- GRangesList(gr1, gr2)
plotSig(ideo, grList, mcolName="score", layout=list("chr1"))

jianhong/NADfinder documentation built on Oct. 29, 2023, 11:08 a.m.