callPeak | Call peaks |
CMHpeaks | differential binding analysis by Cochran-Mantel-Haenszel Test |
count5end | count reads by regions |
countTable | Counting reads in features |
DBFpeaks | differential binding analysis |
DEpeaks | differential binding analysis |
diffPeaks-package | Quantifying Differential Features |
FTpeaks | differential binding analysis by Fisher's exact test |
IntersectionNotStrict | Count reads overlapping genomic ranges |
isCountTable | is output of countTable |
mergePeaks | Merge BED files |
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